# List of top-scoring protein chains for T0427.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 4.68e-51 d.185.1.1,d.185.1.1 61166,61167 1hr7B 443 1.41e-50 d.185.1.1,d.185.1.1 61182,61183 1bccA 446 2.07e-48 d.185.1.1,d.185.1.1 58946,58947 2g47A 990 3.42e-48 2jg4A 990 5.00e-48 1qcrA 446 5.55e-47 d.185.1.1,d.185.1.1 59025,59026 1ppjA 446 6.45e-47 d.185.1.1,d.185.1.1 104252,104253 1sqbA 480 1.66e-46 d.185.1.1,d.185.1.1 105890,105891 1q2lA 939 4.22e-44 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 1hr6A 475 1.55e-40 d.185.1.1,d.185.1.1 61164,61165 2fgeA 995 3.68e-37 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 2bccB 422 1.11e-31 d.185.1.1,d.185.1.1 59051,59052 1qcrB 423 1.28e-31 d.185.1.1,d.185.1.1 59027,59028 1bccB 422 1.56e-31 d.185.1.1,d.185.1.1 58948,58949 1ppjB 439 3.89e-31 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 4.42e-31 1sqbB 453 8.00e-31 d.185.1.1,d.185.1.1 105892,105893 1ezvA 430 3.95e-30 d.185.1.1,d.185.1.1 59541,59542 3cx5B 352 2.58e-15 1cqmA 101 0.6994 d.58.14.1 39321 1qjhA 101 0.9657 d.58.14.1 39326 2bdqA 224 2.766 2q22A 139 4.524 1j02A 267 5.429 a.132.1.1 90732 1dvgA 267 7.292 a.132.1.1 19510 3c3jA 384 8.784 2qy1A 330 9.215 1l2fA 369 9.535 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 91044,91045,91046,91047 1h2vZ 156 9.99 d.58.7.1 76595 1rbsA 155 10.60 c.55.3.1 33558 1mj0A 166 11.46 k.37.1.1 79174 2bvzA 101 12.76 1xr0B 129 13.01 b.55.1.2 115858 1sk0A 140 13.60 2qxzA 330 13.63 2gzmA 267 13.63 1e6cA 173 13.82 c.37.1.2 59296 1wtbA 79 13.94 d.58.7.1 121256 2qx3A 330 14.38 1ml4A 308 14.89 c.78.1.1,c.78.1.1 79255,79256 1iqtA 75 16.04 d.58.7.1 71279 1tiqA 180 16.10 d.108.1.1 107010 1g1xA 98 16.36 d.58.14.1 39327 1qd7E 97 16.37 i.1.1.3 45868 1hh2P 344 16.46 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1risA 101 16.56 d.58.14.1 39314 2bkkB 169 16.98 2i0xA 85 17.82 1jl1A 155 18.61 c.55.3.1 66821 1jzwA 140 19.81 c.47.1.12 67883 1j9bA 141 20.99 c.47.1.12 66459 3b55A 451 21.92 1rdbA 155 22.62 c.55.3.1 33561 2qsjA 154 23.02 1s3cA 141 23.64 1sk2A 140 23.65 1gxsB 158 23.98 1lavA 155 25.80 c.55.3.1 33554 1s3dA 138 26.97 1f21A 155 27.09 c.55.3.1 33550 2a5zA 262 27.58 b.29.1.24 126184 1tzvA 142 27.62 a.79.1.1 107526 1d2fA 390 27.68 c.67.1.3 34411 1jxbA 155 29.19 c.55.3.1 71931 1sk1A 140 29.63 2gtgA 83 29.72 a.64.1.1 135649 2p2cP 169 29.97 1rdaA 155 30.62 c.55.3.1 33567 1j8fA 323 31.14 c.31.1.5 62738 1o73A 144 32.02 c.47.1.10 86638 2db2A 119 32.93 1svxA 169 32.98 k.37.1.1 106058 1rdcA 155 33.92 c.55.3.1 33568 1lawA 155 34.21 c.55.3.1 33557 2qruA 274 34.76 2cokA 113 34.80 2z20A 432 35.36 1i9dA 141 36.72 c.47.1.12 66098 2rn2A 155 37.31 c.55.3.1 33551 2ejnA 153 38.95 a.101.1.1,a.101.1.1 132279,132280 1rbvA 155 40.34 c.55.3.1 33553 3berA 249 40.46 1v5sA 126 42.71 d.129.6.1 108384 2gwmA 200 43.22 1xhoA 148 43.48 d.79.1.2 115301 2gnxA 344 44.90 2gwlA 200 45.37 1vlwA 217 45.53 c.1.10.1 108868 2aj4A 548 45.57 1q1vA 70 47.25 a.159.4.1 104479 2bxjA 101 49.66 1m12A 84 50.09 a.64.1.1 84745 2z9aA 88 52.03 2z1gA 155 52.62 2qypA 91 53.01 2nrqA 159 54.30 1sd8A 141 54.38 1hczA 252 55.79 b.2.6.1,b.84.2.2 22464,28250 1yhuB 144 56.25 2nxqA 134 56.46 1wa3A 205 57.11 c.1.10.1 120802 1ctmA 250 57.24 b.2.6.1,b.84.2.2 22465,28251 2rjbA 455 57.38 1kvaA 155 57.65 c.55.3.1 33559 1paqA 189 57.84 a.118.1.14 94413 2eyuA 261 58.30 2j8sD 169 58.38 2pkfA 334 60.12 1z0jA 170 60.15 c.37.1.8 124319 2oieA 111 60.74 a.204.1.2 139092 1d0vA 356 60.97 c.39.1.1 32476 1l5oA 356 60.98 c.39.1.1 77711 1kvcA 155 61.57 c.55.3.1 33560 2droA 396 62.07 1wovA 250 62.10 a.132.1.1 121124 2bkxA 242 62.22 2drqA 396 62.75 2edbA 116 63.00 1louA 101 63.18 d.58.14.1 39323 2drsA 396 63.27 1wu6A 396 63.61 a.102.1.2 121274 1rbrA 155 64.06 c.55.3.1 33556 1wu4A 396 64.16 a.102.1.2 121272 3b7cA 122 64.63 2drrA 396 64.68 1xk1A 233 64.75 a.132.1.1 122053 1xk3A 233 68.49 a.132.1.1 115400 1hmjA 78 68.75 d.78.1.1 39752 1exbE 103 71.06 d.42.1.2 38643 1yhqH 177 71.30 d.41.4.1 123190 2q4pA 170 71.78 2ic1A 205 71.91 2g0iA 145 74.61 2b1eA 564 75.64 2b5hA 200 76.41 b.82.1.19 127894 2ggtA 164 76.53 c.47.1.10 135156 1kvbA 155 76.55 c.55.3.1 33562 1xqsC 191 76.64 2fug2 181 77.41 1rbuA 155 77.63 c.55.3.1 33552 1iayA 428 77.80 c.67.1.4 62130 1vh0A 161 77.97 c.116.1.3 100626 2r91A 286 78.77 2z1jA 155 78.82 1vctA 205 79.29 a.7.12.1,d.286.1.1 119986,119987 2q4sA 200 79.84 b.82.1.19 139877 2cw9A 194 80.17 d.17.4.13 130920 1px5A 349 80.42 a.160.1.2,d.218.1.6 95277,95278 2pfvA 563 80.49 3crdA 100 80.54 a.77.1.3 18429 2gqkA 173 80.82 2b7mA 566 81.97 a.118.17.2 128046 2z1iA 155 81.99 1nekC 129 83.44 f.21.2.2 80431 1xjjA 644 83.62 2f2lX 167 83.68 d.118.1.1 132844 1shkA 173 83.85 c.37.1.2 31932 1qhbA 596 83.89 a.111.1.2 19055 1f20A 435 85.15 b.43.4.1,c.25.1.4 64932,64933 2fkbA 180 87.50 d.113.1.2 133650 1n45A 233 87.56 a.132.1.1 79981 1x0mA 403 89.38 c.67.1.1 121550