# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 2.00e-62 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 3.65e-61 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 8.23e-60 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 9.62e-59 1kb9A 431 1.59e-58 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 6.19e-58 d.185.1.1,d.185.1.1 59541,59542 2g47A 990 8.55e-57 1q2lA 939 4.05e-55 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 5.23e-52 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 1.01e-43 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 3.17e-43 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 1.13e-42 3broA 141 2.294 1wyuB 474 3.046 c.67.1.7 121453 3bpvA 138 3.132 2cdnA 201 3.271 c.37.1.1 130289 2q83A 346 3.593 2dgmA 466 5.815 c.67.1.6 131508 3cjnA 162 5.997 3bjaA 139 6.363 2gnxA 365 6.472 1jyoA 130 6.561 d.198.1.1 67483 2qfjA 216 7.170 3bj6A 152 7.575 2fa5A 162 7.686 2i7qA 402 9.111 2rdpA 150 9.457 3c5iA 369 9.477 2hoxA 427 10.36 c.67.1.1 136644 2nnnA 140 11.28 1wovA 250 11.46 a.132.1.1 121124 2gxgA 146 12.17 1zejA 293 12.39 1j7lA 264 12.93 d.144.1.6 62697 1k3eA 156 13.34 d.198.1.1 68103 2c8mA 262 13.77 1l5aA 436 13.89 c.43.1.2,c.43.1.2 75923,75924 1d2fA 390 14.06 c.67.1.3 34411 1txdA 385 14.27 a.87.1.1,b.55.1.1 107422,107423 3csvA 333 14.59 1i1iP 681 14.66 d.92.1.5 40297 3boqA 160 15.16 1m7yA 435 16.89 c.67.1.4 78761 2p4fA 299 17.06 2qr4A 587 17.18 2nyxA 168 17.39 2fbhA 146 17.88 a.4.5.28 133245 1ihgA 370 18.36 a.118.8.1,b.62.1.1 62380,62381 2hr3A 147 18.85 a.4.5.28 136678 1xi9A 406 19.42 c.67.1.1 115355 1f44A 324 19.84 a.60.9.1,d.163.1.1 64982,64983 1ynuA 473 20.48 c.67.1.4 123762 1vqqA 646 21.36 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1lj9A 144 21.73 a.4.5.28 78035 1aisB 200 21.88 a.74.1.2,a.74.1.2 18384,18385 2hdyA 440 22.09 3buvA 326 22.42 2d1eA 248 22.87 1zzkA 82 23.08 d.51.1.1 125909 1yzbA 182 24.01 3bddA 142 24.06 2pftA 571 24.79 1vp4A 425 24.82 c.67.1.1 113935 3bu8A 235 24.87 1lj5A 379 25.28 e.1.1.1 73928 1bl3A 160 25.31 c.55.3.2 33655 2di4A 238 25.46 a.269.1.1 131522 1ofgA 381 25.50 c.2.1.3,d.81.1.5 30064,39979 1lnwA 147 26.08 a.4.5.28 78104 1c7nA 399 26.11 c.67.1.3 34413 3d1uA 288 26.78 2ethA 154 27.05 a.4.5.28 132358 1in4A 334 27.08 a.4.5.11,c.37.1.20 62597,62598 2c40A 312 27.28 1kqpA 271 28.15 c.26.2.1 72883 1bj4A 470 28.81 c.67.1.4 34479 1ki1B 352 29.13 a.87.1.1,b.55.1.1 72497,72498 1fxlA 167 30.31 d.58.7.1,d.58.7.1 39183,39184 1s3jA 155 30.95 a.4.5.28 98437 1s1eA 224 31.60 a.39.1.5 112007 1frb 315 32.29 1e8aA 91 32.88 a.39.1.2 17188 1xd7A 145 33.01 a.4.5.55 109566 2bbrA 195 34.77 2f2gA 221 35.01 a.132.1.3 132816 1bw0A 416 35.67 c.67.1.1 34385 1wstA 417 35.85 c.67.1.1 121244 1d8dA 377 36.21 a.118.6.1 19185 2fd5A 180 36.78 a.4.1.9,a.121.1.1 133291,133292 2bv6A 142 36.80 2fbiA 142 36.96 a.4.5.28 133246 1a0p 290 37.04 2o36A 674 38.23 1j98A 157 38.64 d.185.1.2 62755 1bjnA 360 39.86 c.67.1.4 34469 2agaA 190 39.88 1lk9A 448 41.77 c.67.1.1 78057 2q4eA 362 42.97 1htqA 477 44.01 d.15.9.1,d.128.1.1 71035,71036 2q4xA 221 44.71 a.132.1.3 139880 1jayA 212 44.86 c.2.1.6 66478 1juvA 193 46.43 c.71.1.1 90912 1m6sA 347 46.50 c.67.1.1 78701 1a4pA 96 46.71 a.39.1.2 17176 2dtjA 178 46.82 1kl1A 419 50.11 c.67.1.4 72663 1ub0A 258 50.36 c.72.1.2 88394 1n45A 233 50.49 a.132.1.1 79981 2bvcA 486 50.92 d.15.9.1,d.128.1.1 129243,129244 2b5hA 200 51.38 b.82.1.19 127894 1r45A 204 51.93 d.166.1.1 111683 2ho3A 325 52.06 2a61A 145 53.26 a.4.5.28 126187 2anrA 178 53.28 1ykjA 394 54.78 1ovaA 386 54.99 e.1.1.1 42619 1rv3A 483 55.57 c.67.1.4 105101 1f5qB 252 55.79 a.74.1.1,a.74.1.1 18362,18363 2ywrA 216 56.44 1wgzA 510 56.48 3bhpA 60 56.58 1s95A 333 56.60 d.159.1.3 105375 1f07A 321 59.01 c.1.16.3 59560 1tltA 319 59.82 c.2.1.3,d.81.1.5 107135,107136 2qjcA 262 60.10 1qlsA 99 60.21 a.39.1.2 17185 1hw5A 210 62.91 a.4.5.4,b.82.3.2 16098,28137 2q91A 101 63.28 1x19A 359 64.62 2cohA 202 65.06 a.4.5.4,b.82.3.2 130677,130678 2pefA 373 65.72 1huw 166 66.60 2cxaA 256 66.96 d.108.1.6 130993 2r44A 331 67.98 2ag5A 246 69.37 c.2.1.2 126719 1zybA 232 69.64 a.4.5.4,b.82.3.2 125815,125816 3bwnA 391 70.26 1rtwA 220 70.43 a.132.1.3 97823 1b8gA 429 70.67 c.67.1.4 34499 2r40D 266 71.79 3cedA 98 72.90 2douA 376 74.13 3ceaA 346 74.41 2rgxA 206 75.20 2qg7A 458 76.67 3crrA 323 76.92 2ze7A 253 77.38 2phpA 192 77.74 3c1vA 113 78.77 3btxA 204 79.37 1tyhA 248 79.94 a.132.1.3 107458 1jg8A 347 81.20 c.67.1.1 62946 1mi3A 322 81.22 c.1.7.1 91274 2f6sA 201 81.91 a.265.1.1 133058 3bjhA 119 81.92 2h4pA 394 82.16 2qcxA 263 82.40 1iugA 352 82.87 c.67.1.3 90699 1xnfA 275 82.97 a.118.8.1 115580 1a0pA 290 83.01 a.60.9.1,d.163.1.1 18105,42165 2hejA 323 83.77 2z20A 432 83.78 2qrrA 101 84.09 2pyqA 114 84.14 1sk7A 198 84.43 a.132.1.2 105671 2qgnA 322 85.07 1kyqA 274 85.11 c.2.1.11,e.37.1.1 73281,73282 1w7lA 422 85.31 c.67.1.1 109226 1yqsA 349 85.43 e.3.1.1 123899 1zin 217 85.56 1p5tA 127 85.56 b.55.1.2 94148 1dfoA 417 85.98 c.67.1.4 34480 1jtvA 327 87.59 c.2.1.2 84230 1ha1 184 87.67 1o69A 394 89.87 c.67.1.4 92560