# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.24e-57 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 2.20e-56 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 6.22e-55 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 2.17e-54 1kb9A 431 3.30e-54 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 2.44e-53 d.185.1.1,d.185.1.1 59541,59542 2g47A 990 2.05e-52 1q2lA 939 8.19e-51 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 2.37e-48 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 8.19e-40 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 1.30e-39 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 1.10e-38 3bpvA 138 1.808 2fa5A 162 1.996 3broA 141 2.055 3boqA 160 2.617 2p4fA 299 3.041 1rec 201 3.422 3cjnA 162 3.519 2rdpA 150 4.129 2hr3A 147 5.017 a.4.5.28 136678 3bj6A 152 5.023 3bjaA 139 5.243 1wyuB 474 5.870 c.67.1.7 121453 2gxgA 146 5.914 2nnnA 140 6.308 1xi9A 406 6.655 c.67.1.1 115355 1omrA 201 6.824 a.39.1.5 93349 1aisB 200 7.524 a.74.1.2,a.74.1.2 18384,18385 1lj9A 144 8.178 a.4.5.28 78035 1lnwA 147 8.201 a.4.5.28 78104 1g8iA 190 8.263 a.39.1.5 60363 2bbrA 195 8.540 2cdnA 201 8.651 c.37.1.1 130289 1zybA 232 8.689 a.4.5.4,b.82.3.2 125815,125816 3buvA 326 9.181 1f44A 324 10.30 a.60.9.1,d.163.1.1 64982,64983 2ethA 154 10.57 a.4.5.28 132358 3csvA 333 10.65 2fbhA 146 10.81 a.4.5.28 133245 1s3jA 155 11.15 a.4.5.28 98437 2nyxA 168 11.74 1xd7A 145 11.89 a.4.5.55 109566 2c8mA 262 12.17 3c5iA 369 12.23 1wovA 250 12.36 a.132.1.1 121124 1jyoA 130 13.13 d.198.1.1 67483 3bddA 142 13.35 1u5tA 233 13.95 a.4.5.54,a.4.5.54 107684,107685 2dgmA 466 14.03 c.67.1.6 131508 1e8aA 91 15.48 a.39.1.2 17188 2q83A 346 15.72 2qfjA 216 15.96 1a4pA 96 16.68 a.39.1.2 17176 1j7lA 264 16.77 d.144.1.6 62697 1kqpA 271 18.20 c.26.2.1 72883 2ekgA 327 19.39 1zzkA 82 19.74 d.51.1.1 125909 2hoxA 427 19.76 c.67.1.1 136644 1jayA 212 19.92 c.2.1.6 66478 1k3eA 156 20.99 d.198.1.1 68103 2qg7A 458 21.34 2i7qA 402 21.89 1frb 315 22.00 1d2fA 390 22.63 c.67.1.3 34411 1htqA 477 22.89 d.15.9.1,d.128.1.1 71035,71036 2i88A 191 23.61 2gnxA 365 23.80 3c1vA 113 24.36 2uv0E 175 25.12 1f5qB 252 25.13 a.74.1.1,a.74.1.1 18362,18363 1s1eA 224 25.32 a.39.1.5 112007 1yzbA 182 25.43 2f2gA 221 25.56 a.132.1.3 132816 1qlsA 99 25.57 a.39.1.2 17185 1a0pA 290 26.44 a.60.9.1,d.163.1.1 18105,42165 1hw5A 210 26.60 a.4.5.4,b.82.3.2 16098,28137 2r40D 266 27.31 1m6sA 347 27.74 c.67.1.1 78701 3bhpA 60 27.83 1mi3A 322 27.92 c.1.7.1 91274 1iugA 352 28.12 c.67.1.3 90699 2q91A 101 28.18 1i6xA 209 28.57 a.4.5.4,b.82.3.2 83673,83674 1m7yA 435 30.31 c.67.1.4 78761 2h2kA 106 30.46 1yqsA 349 30.68 e.3.1.1 123899 2qcxA 263 31.05 2agaA 190 31.07 1vp4A 425 31.51 c.67.1.1 113935 2e2rA 244 31.59 2fbiA 142 32.21 a.4.5.28 133246 2aaoA 166 32.84 1rtwA 220 32.88 a.132.1.3 97823 2ccmA 191 33.12 1z67A 135 33.27 a.259.1.1 124507 1wdcB 156 33.32 a.39.1.5 17302 1zejA 293 34.88 2bv6A 142 35.16 2yviA 111 35.25 1s6cA 183 35.53 a.39.1.5 98594 2q4xA 221 35.69 a.132.1.3 139880 1sk7A 198 36.15 a.132.1.2 105671 1ynuA 473 36.37 c.67.1.4 123762 2bvcA 486 36.68 d.15.9.1,d.128.1.1 129243,129244 1sflA 238 37.20 c.1.10.1 112077 1w7lA 422 38.20 c.67.1.1 109226 2jgzB 260 39.05 1f07A 321 39.11 c.1.16.3 59560 1xfrA 128 40.49 2agtA 319 40.70 1exrA 148 42.41 a.39.1.5 17299 1qwkA 317 42.93 c.1.7.1 96482 2ct9A 208 43.14 1pwgA 349 43.40 e.3.1.1 104340 2douA 376 43.73 2z20A 432 43.75 1d8dA 377 43.86 a.118.6.1 19185 1xjzA 233 44.84 a.132.1.1 122049 1dfoA 417 45.57 c.67.1.4 34480 2h61A 92 46.55 a.39.1.2 136169 1r45A 204 47.01 d.166.1.1 111683 2dt9A 167 47.21 2f6lA 166 47.45 a.130.1.4 133049 2g2bA 150 48.03 1a0p 290 48.27 1ofgA 381 48.42 c.2.1.3,d.81.1.5 30064,39979 1jg8A 347 48.66 c.67.1.1 62946 2r44A 331 48.69 2egdA 98 49.35 1s69A 124 49.96 a.1.1.1 105305 3cedA 98 50.40 2dr1A 386 51.07 1o7jA 327 51.79 c.88.1.1 81140 2nugA 221 51.81 1us0A 316 52.10 c.1.7.1 99850 1w63A 618 52.45 i.23.1.1 109192 1ihgA 370 53.18 a.118.8.1,b.62.1.1 62380,62381 2b5hA 200 53.74 b.82.1.19 127894 2qr4A 587 53.82 1txdA 385 54.28 a.87.1.1,b.55.1.1 107422,107423 1n45A 233 55.43 a.132.1.1 79981 2a61A 145 56.02 a.4.5.28 126187 1sdeA 347 56.54 e.3.1.1 112073 1ksoA 101 56.71 a.39.1.2 72926 2c40A 312 57.16 1nvpB 57 57.17 a.32.1.1 92211 1tyhA 248 58.59 a.132.1.3 107458 2di4A 238 58.81 a.269.1.1 131522 1fxlA 167 60.36 d.58.7.1,d.58.7.1 39183,39184 2ho1A 252 60.99 2f1sA 186 61.01 1ggzA 148 61.50 a.39.1.5 70176 2ag5A 246 63.09 c.2.1.2 126719 1wstA 417 63.25 c.67.1.1 121244 1i1iP 681 63.40 d.92.1.5 40297 2p71A 132 63.97 a.39.2.1 139516 1in4A 334 64.13 a.4.5.11,c.37.1.20 62597,62598 2d1eA 248 64.18 2ze7A 253 64.32 1c7nA 399 64.85 c.67.1.3 34413 1bjnA 360 65.56 c.67.1.4 34469 1ci9A 392 65.64 e.3.1.1 64767 2zfyA 234 66.84 1fadA 99 66.92 a.77.1.2 18428 1bw0A 416 67.77 c.67.1.1 34385 1zuaX 317 67.85 1xnfA 275 68.01 a.118.8.1 115580 1iw0A 215 68.02 a.132.1.1 83720 1xo5A 183 68.06 a.39.1.5 115680 2hdyA 440 68.35 2dtjA 178 68.88 1kk8B 139 69.12 a.39.1.5 77430 3bjhA 119 70.70 3btxA 204 72.39 1vbjA 281 72.40 2cxaA 256 73.11 d.108.1.6 130993 3bk2A 562 73.88 1fmcA 255 74.50 c.2.1.2 29856 3ceaA 346 75.07 1xo0A 324 75.52 a.60.9.1,d.163.1.1 115674,115675 1s95A 333 75.79 d.159.1.3 105375 1qo0D 196 76.28 c.23.1.3 31125 1cb0A 283 76.69 c.56.2.1 33790 1b8gA 429 76.93 c.67.1.4 34499 2grmA 317 76.94 2hp0A 466 78.36 1xvhA 129 78.41 a.8.1.2,a.8.1.2 116084,116085 1hf2A 210 78.48 b.80.3.1,c.102.1.1 60992,60993 1sg4A 260 78.52 c.14.1.3 118957 1auiB 169 78.76 a.39.1.5 17325 1s1pA 331 79.11 c.1.7.1 98350 1rwyA 109 79.13 a.39.1.4 98002 2tysA 268 80.28 c.1.2.4 28572 2cohA 202 81.85 a.4.5.4,b.82.3.2 130677,130678 2hpsA 186 82.20 1lucB 324 82.51 c.1.16.1 29548 1j96A 323 82.85 c.1.7.1 71616 1ki1B 352 82.91 a.87.1.1,b.55.1.1 72497,72498 1bj4A 470 83.13 c.67.1.4 34479 2qjcA 262 83.99 2phpA 192 85.37 1swvA 267 86.48 c.108.1.3 112134 2ig7A 401 87.24 1uhnA 189 87.39 a.39.1.5 99399 2ou3A 161 87.74 1na3A 91 87.78 k.38.1.1 85481 2hejA 323 88.41 2ho3A 325 88.71 1sl8A 191 88.78 a.39.1.5 112099 2fq4A 192 89.08 a.4.1.9,a.121.1.1 133937,133938 2v75A 104 89.38