# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 4.65e-64 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 7.82e-63 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 2.32e-61 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 7.07e-60 1kb9A 431 4.22e-59 d.185.1.1,d.185.1.1 77311,77312 2g47A 990 1.90e-58 1ezvA 430 2.52e-58 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 8.55e-57 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 6.03e-54 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 7.54e-46 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 5.43e-45 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 7.91e-44 3buvA 326 0.4863 3bpvA 138 1.493 3broA 141 1.967 1wyuB 474 2.070 c.67.1.7 121453 1wovA 250 2.876 a.132.1.1 121124 1a0pA 290 3.567 a.60.9.1,d.163.1.1 18105,42165 1i1iP 681 3.600 d.92.1.5 40297 2rdpA 150 5.238 3boqA 160 5.271 3bj6A 152 6.151 1rtwA 220 6.233 a.132.1.3 97823 2fa5A 162 6.737 2dgmA 466 6.963 c.67.1.6 131508 2fd5A 180 6.990 a.4.1.9,a.121.1.1 133291,133292 2p4fA 299 7.385 2cdnA 201 7.416 c.37.1.1 130289 1xi9A 406 7.638 c.67.1.1 115355 1in4A 334 7.662 a.4.5.11,c.37.1.20 62597,62598 1m6sA 347 7.894 c.67.1.1 78701 2q83A 346 8.411 2id3A 225 8.448 a.4.1.9,a.121.1.1 137261,137262 3bjaA 139 8.526 2nyxA 168 9.328 1aisB 200 9.523 a.74.1.2,a.74.1.2 18384,18385 1f44A 324 10.21 a.60.9.1,d.163.1.1 64982,64983 2aaoA 166 10.85 1zejA 293 10.96 1bl3A 160 11.17 c.55.3.2 33655 1zzkA 82 11.40 d.51.1.1 125909 2hoxA 427 11.60 c.67.1.1 136644 2o36A 674 11.77 2gxgA 146 11.78 1ub0A 258 11.98 c.72.1.2 88394 3d1uA 288 12.63 2hr3A 147 14.10 a.4.5.28 136678 1j7lA 264 14.23 d.144.1.6 62697 2fbhA 146 15.33 a.4.5.28 133245 2qcxA 263 16.41 1lj9A 144 16.55 a.4.5.28 78035 1ki1B 352 16.92 a.87.1.1,b.55.1.1 72497,72498 1bw0A 416 18.77 c.67.1.1 34385 1vp4A 425 19.06 c.67.1.1 113935 1lnwA 147 19.21 a.4.5.28 78104 2bbrA 195 19.54 1jg8A 347 20.46 c.67.1.1 62946 2qfjA 216 20.78 1wstA 417 21.59 c.67.1.1 121244 1tyhA 248 21.60 a.132.1.3 107458 2dtjA 178 21.72 1xnfA 275 22.02 a.118.8.1 115580 1kl1A 419 22.24 c.67.1.4 72663 1l5aA 436 23.84 c.43.1.2,c.43.1.2 75923,75924 2vooA 193 24.18 1c7nA 399 24.39 c.67.1.3 34413 2ho1A 252 25.94 2ethA 154 26.12 a.4.5.28 132358 2qg7A 458 26.66 2dt9A 167 26.89 1zybA 232 26.92 a.4.5.4,b.82.3.2 125815,125816 1fxlA 167 27.00 d.58.7.1,d.58.7.1 39183,39184 2hdyA 440 27.59 1s3jA 155 28.45 a.4.5.28 98437 1dfoA 417 29.22 c.67.1.4 34480 2f2gA 221 29.68 a.132.1.3 132816 2grjA 192 30.20 2g2bA 150 30.47 1w7lA 422 30.58 c.67.1.1 109226 1a0p 290 30.62 2pftA 571 31.22 2nnnA 140 32.74 2anrA 178 33.51 2qr4A 587 33.54 3csvA 333 33.59 1yzbA 182 34.82 1lj5A 379 34.92 e.1.1.1 73928 3bddA 142 35.14 1m7yA 435 35.34 c.67.1.4 78761 1iugA 352 36.37 c.67.1.3 90699 2b5hA 200 37.10 b.82.1.19 127894 1qvtA 194 37.82 a.4.1.9,a.121.1.1 104602,104603 1jyoA 130 38.73 d.198.1.1 67483 3bwnA 391 38.76 2hpsA 186 39.42 1w23A 360 39.83 c.67.1.4 114088 1d2fA 390 40.01 c.67.1.3 34411 2a61A 145 40.54 a.4.5.28 126187 1oohA 126 40.87 a.39.2.1 93383 2ondA 308 41.19 1bj4A 470 42.65 c.67.1.4 34479 3bu8A 235 42.75 3c5iA 369 43.10 1yakA 263 43.34 a.132.1.3 122833 2i7qA 402 43.52 2gnxA 365 44.30 1zin 217 44.86 2q1zA 184 45.18 2douA 376 45.41 1s1eA 224 47.15 a.39.1.5 112007 1htqA 477 48.17 d.15.9.1,d.128.1.1 71035,71036 2grmA 317 48.23 1ihgA 370 48.52 a.118.8.1,b.62.1.1 62380,62381 1sl8A 191 48.60 a.39.1.5 112099 2uv0E 175 48.64 1d8dA 377 48.85 a.118.6.1 19185 3ccyA 203 48.95 3bjhA 119 48.99 1lk9A 448 49.35 c.67.1.1 78057 1jf2A 195 49.39 a.39.1.5 62930 1na3A 91 49.60 k.38.1.1 85481 3cedA 98 50.06 3bs9A 87 50.15 2nugA 221 51.76 2bv6A 142 51.88 2hp0A 466 52.61 3crjA 199 53.94 3cdlA 203 54.17 1itg 166 54.71 2z20A 432 54.78 1frb 315 55.12 2ifuA 307 56.17 2qcoA 210 57.08 1x19A 359 57.56 2fbiA 142 57.63 a.4.5.28 133246 1bjnA 360 58.47 c.67.1.4 34469 1ynuA 473 58.67 c.67.1.4 123762 2qrwA 128 58.78 1pu6A 218 58.84 a.96.1.5 95123 2fq4A 192 59.36 a.4.1.9,a.121.1.1 133937,133938 1omrA 201 59.41 a.39.1.5 93349 2phpA 192 59.50 1j7gA 144 60.31 c.110.1.1 84130 3c4bA 265 60.63 1elwA 118 61.42 a.118.8.1 19207 1auiB 169 62.77 a.39.1.5 17325 2di4A 238 62.84 a.269.1.1 131522 1ykjA 394 63.24 2fp1A 166 64.95 a.130.1.4 133891 2dtvA 397 64.99 2ze7A 253 65.63 2ct9A 208 65.78 2pyqA 114 66.76 1s69A 124 67.17 a.1.1.1 105305 3cnhA 200 67.75 1juvA 193 67.81 c.71.1.1 90912 2ou3A 161 68.32 2cxaA 256 68.65 d.108.1.6 130993 2qmaA 497 69.07 1o69A 394 69.90 c.67.1.4 92560 3bhpA 60 70.20 2qjcA 262 70.39 1yadA 221 70.43 1o3yA 166 70.50 c.37.1.8 86618 1b8gA 429 70.56 c.67.1.4 34499 1a6m 151 70.85 1ovaA 386 71.23 e.1.1.1 42619 2bvcA 486 72.80 d.15.9.1,d.128.1.1 129243,129244 1in6A 334 72.82 a.4.5.11,c.37.1.20 62601,62602 1a4pA 96 73.12 a.39.1.2 17176 1e8aA 91 73.65 a.39.1.2 17188 2d1eA 248 74.11 1ofgA 381 74.39 c.2.1.3,d.81.1.5 30064,39979 1eyvA 156 74.94 a.79.1.1 18446 1r45A 204 75.81 d.166.1.1 111683 1yj7A 171 76.15 3cjnA 162 78.84 1txdA 385 79.36 a.87.1.1,b.55.1.1 107422,107423 1nvpB 57 79.79 a.32.1.1 92211 1jf9A 408 79.92 c.67.1.3 62931 1kmkA 406 80.03 c.67.1.3 68696 3btxA 204 81.17 1urvA 190 81.52 a.1.1.2 113414 1z67A 135 81.87 a.259.1.1 124507 1kkhA 317 83.77 d.14.1.5,d.58.26.3 72645,72646 3bosA 242 86.50 1sflA 238 87.26 c.1.10.1 112077 2cohA 202 87.47 a.4.5.4,b.82.3.2 130677,130678 2rgxA 206 88.97 1s95A 333 89.33 d.159.1.3 105375 1ew6A 137 89.35 a.1.1.2 15637