# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 9.53e-51 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 2.85e-49 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 6.46e-48 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 5.17e-47 1kb9A 431 6.44e-47 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 2.17e-46 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 3.15e-43 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 3.76e-43 2fgeA 995 1.44e-38 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 3cx5B 352 5.94e-35 1kb9B 352 1.13e-34 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 1.42e-34 d.185.1.1,d.185.1.1 59543,59544 1l5aA 436 0.5759 c.43.1.2,c.43.1.2 75923,75924 1mi3A 322 0.7830 c.1.7.1 91274 2q83A 346 1.469 2hejA 323 1.953 3buvA 326 2.070 1wovA 250 2.559 a.132.1.1 121124 1i1iP 681 2.726 d.92.1.5 40297 1frb 315 3.246 2agtA 319 3.566 1s1pA 331 3.902 c.1.7.1 98350 1hw6A 278 4.976 c.1.7.1 61296 2ao0A 324 5.501 1zuaX 317 6.150 1d2fA 390 6.882 c.67.1.3 34411 1ynpA 317 7.131 1ki1B 352 7.310 a.87.1.1,b.55.1.1 72497,72498 1tqxA 227 7.844 c.1.2.2 112614 1yakA 263 8.173 a.132.1.3 122833 2hdyA 440 8.488 1ads 315 8.699 1wzdA 215 9.393 a.132.1.1 121493 1wyuB 474 9.876 c.67.1.7 121453 1us0A 316 9.944 c.1.7.1 99850 1vbjA 281 10.62 2p4fA 299 11.32 1n45A 233 11.82 a.132.1.1 79981 1zgdA 312 12.08 1xbyA 216 12.25 c.1.2.3 121846 1qwkA 317 12.80 c.1.7.1 96482 1s4bP 674 12.95 d.92.1.5 105252 2agaA 190 13.66 3broA 141 14.67 1ad4A 266 15.06 c.1.21.1 29670 2dtjA 178 15.51 2fa5A 162 15.78 3boqA 160 16.04 2o36A 674 16.72 1rtwA 220 16.89 a.132.1.3 97823 2qcxA 263 17.17 1xjzA 233 17.42 a.132.1.1 122049 1xi9A 406 17.72 c.67.1.1 115355 2qgnA 322 18.35 3d1uA 288 19.34 1j96A 323 19.51 c.1.7.1 71616 1iw0A 215 19.97 a.132.1.1 83720 2bbrA 195 20.25 1r45A 204 21.20 d.166.1.1 111683 3c5iA 369 23.55 1b8gA 429 23.91 c.67.1.4 34499 1jf3A 147 24.85 a.1.1.2 71642 2yviA 111 25.35 3bjhA 119 25.58 1v33A 366 25.79 d.264.1.1 100278 1bjnA 360 26.55 c.67.1.4 34469 1ynuA 473 26.82 c.67.1.4 123762 1oohA 126 27.98 a.39.2.1 93383 2z20A 432 28.49 2pftA 571 29.33 1u4qA 322 29.65 a.7.1.1,a.7.1.1,a.7.1.1 113024,113025,113026 1t3iA 420 29.72 c.67.1.3 106354 1vqqA 646 29.76 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1ojqA 212 29.79 d.166.1.1 93146 1xvhA 129 30.58 a.8.1.2,a.8.1.2 116084,116085 2ag5A 246 30.73 c.2.1.2 126719 2b5hA 200 31.19 b.82.1.19 127894 1pufB 73 32.86 a.4.1.1 95132 1j7lA 264 33.21 d.144.1.6 62697 2f2gA 221 33.22 a.132.1.3 132816 1h1yA 228 33.27 c.1.2.2 76506 1m5wA 243 33.57 c.1.24.1 84836 3bj6A 152 34.27 2grmA 317 34.44 2rdpA 150 34.58 3cedA 98 34.97 3bczA 293 35.14 1tyhA 248 36.07 a.132.1.3 107458 1m6sA 347 37.09 c.67.1.1 78701 2douA 376 37.78 2qg7A 458 38.19 1fviA 297 38.61 b.40.4.6,d.142.2.1 25364,41578 1qkkA 155 39.74 c.23.1.1 31104 1rec 201 39.75 3crrA 323 39.76 2q4eA 362 39.82 3cjnA 162 40.12 3bpvA 138 40.30 2csgA 424 40.39 b.82.2.12 130768 1txdA 385 40.62 a.87.1.1,b.55.1.1 107422,107423 1c7nA 399 42.04 c.67.1.3 34413 1fe0A 68 42.30 d.58.17.1 39345 2ccqA 99 43.21 d.314.1.1 130252 1bw0A 416 44.23 c.67.1.1 34385 3bjaA 139 44.58 2hoqA 241 45.47 1w7lA 422 45.53 c.67.1.1 109226 1m7yA 435 45.69 c.67.1.4 78761 1rtqA 299 46.67 c.56.5.4 97819 1pz1A 333 48.12 c.1.7.1 95390 2vooA 193 49.04 2hehA 387 49.09 1vp4A 425 49.87 c.67.1.1 113935 1lokA 291 50.93 c.56.5.4 78122 3cjpA 272 51.59 2tysA 268 52.03 c.1.2.4 28572 1u08A 386 52.44 c.67.1.1 107543 2nn4A 72 53.81 1nfp 228 54.71 1sflA 238 54.90 c.1.10.1 112077 2ho3A 325 55.90 1mxsA 225 57.34 c.1.10.1 91494 1wstA 417 57.37 c.67.1.1 121244 1a0pA 290 60.67 a.60.9.1,d.163.1.1 18105,42165 1spgA 144 61.86 a.1.1.2 15409 2ou3A 161 62.04 1gdeA 389 62.06 c.67.1.1 60456 1ho1A 242 62.24 c.1.24.1 61097 1na3A 91 62.70 k.38.1.1 85481 2d1eA 248 62.95 1jayA 212 63.38 c.2.1.6 66478 1bouA 139 63.43 a.88.1.1 18521 2qrrA 101 63.75 2q4xA 221 65.00 a.132.1.3 139880 2dt9A 167 65.30 2db9A 149 65.83 1xnfA 275 65.92 a.118.8.1 115580 1fvpA 231 66.16 c.1.16.2 29556 1lqaA 346 67.78 c.1.7.1 84674 1iugA 352 68.76 c.67.1.3 90699 2bgsA 344 69.04 1eg5A 384 69.74 c.67.1.3 34429 1hf2A 210 70.65 b.80.3.1,c.102.1.1 60992,60993 2glxA 332 70.73 1ylmA 144 71.07 1ad1A 266 71.17 c.1.21.1 29668 3cdlA 203 71.48 2nogA 173 72.08 2qswA 100 72.31 2c71A 216 74.14 c.6.2.3 130017 2zfoA 140 75.00 1fadA 99 75.25 a.77.1.2 18428 2fq4A 192 78.02 a.4.1.9,a.121.1.1 133937,133938 2es4D 332 78.20 2qkoA 215 78.91 1b72B 87 79.03 a.4.1.1 16001 1a0p 290 79.26 1y81A 138 80.13 c.2.1.8 122731 1pieA 419 81.39 d.14.1.5,d.58.26.7 94706,94707 2q0yA 153 82.20 3bhpA 60 82.52 1f44A 324 84.22 a.60.9.1,d.163.1.1 64982,64983 2z8aA 146 84.50 1cc8A 73 85.33 d.58.17.1 39343 2sas 185 85.85 2hoxA 427 86.22 c.67.1.1 136644 1ua4A 455 86.78 c.72.1.3 99128 1zybA 232 88.17 a.4.5.4,b.82.3.2 125815,125816 2bv6A 142 88.89 1fsiA 189 89.33 d.61.1.1 39536 2aplA 157 89.89 a.258.1.1 127132