# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.27e-64 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 2.51e-63 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 1.09e-61 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 8.40e-61 1kb9A 431 1.63e-60 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 1.17e-59 d.185.1.1,d.185.1.1 59541,59542 2g47A 990 6.13e-59 1q2lA 939 4.68e-57 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 2.73e-54 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 3.56e-46 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 9.34e-46 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 2.32e-44 1wyuB 474 1.829 c.67.1.7 121453 2q83A 346 2.475 2o36A 674 3.597 3broA 141 4.072 1i1iP 681 4.293 d.92.1.5 40297 3bpvA 138 5.010 1f44A 324 5.335 a.60.9.1,d.163.1.1 64982,64983 2p4fA 299 5.831 1xi9A 406 5.922 c.67.1.1 115355 1wovA 250 5.987 a.132.1.1 121124 3cjnA 162 5.993 1in4A 334 6.756 a.4.5.11,c.37.1.20 62597,62598 3buvA 326 7.322 2fa5A 162 7.443 3bj6A 152 8.319 2pftA 571 8.659 2dgmA 466 8.901 c.67.1.6 131508 2qfjA 216 9.223 3bjaA 139 10.30 3c5iA 369 10.42 1w63A 618 11.62 i.23.1.1 109192 2gnxA 365 11.86 1j7lA 264 12.31 d.144.1.6 62697 1l5aA 436 12.63 c.43.1.2,c.43.1.2 75923,75924 2i7qA 402 12.77 2f2gA 221 12.97 a.132.1.3 132816 2rdpA 150 13.30 2cdnA 201 13.54 c.37.1.1 130289 3csvA 333 14.26 1d2fA 390 15.50 c.67.1.3 34411 2hdyA 440 15.51 2qcxA 263 15.96 2hoxA 427 16.00 c.67.1.1 136644 2hr3A 147 16.34 a.4.5.28 136678 1rtwA 220 17.59 a.132.1.3 97823 2c8mA 262 17.64 1x19A 359 17.84 1yzbA 182 18.23 1ki1B 352 18.33 a.87.1.1,b.55.1.1 72497,72498 2nnnA 140 19.33 1zybA 232 19.61 a.4.5.4,b.82.3.2 125815,125816 1jayA 212 20.17 c.2.1.6 66478 3bddA 142 20.63 1m6sA 347 21.62 c.67.1.1 78701 1txdA 385 21.71 a.87.1.1,b.55.1.1 107422,107423 1ihgA 370 22.11 a.118.8.1,b.62.1.1 62380,62381 2gxgA 146 23.17 1zejA 293 23.75 1m7yA 435 23.87 c.67.1.4 78761 1jyoA 130 23.94 d.198.1.1 67483 3boqA 160 25.10 1zzkA 82 25.62 d.51.1.1 125909 1w7lA 422 25.97 c.67.1.1 109226 2ag5A 246 26.34 c.2.1.2 126719 2douA 376 26.66 1mi3A 322 26.72 c.1.7.1 91274 1aisB 200 26.90 a.74.1.2,a.74.1.2 18384,18385 2qg7A 458 27.07 1c7nA 399 28.03 c.67.1.3 34413 1tyhA 248 28.16 a.132.1.3 107458 2bvcA 486 28.76 d.15.9.1,d.128.1.1 129243,129244 1bw0A 416 28.96 c.67.1.1 34385 1d8dA 377 29.89 a.118.6.1 19185 1vp4A 425 30.53 c.67.1.1 113935 1e8aA 91 31.09 a.39.1.2 17188 1htqA 477 31.28 d.15.9.1,d.128.1.1 71035,71036 1xd7A 145 31.58 a.4.5.55 109566 2bbrA 195 32.15 2d1eA 248 32.39 2id3A 225 32.71 a.4.1.9,a.121.1.1 137261,137262 1jg8A 347 32.89 c.67.1.1 62946 2ethA 154 33.55 a.4.5.28 132358 1y791 680 33.68 1qwkA 317 34.03 c.1.7.1 96482 2nyxA 168 34.14 1vqqA 646 34.15 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1bl3A 160 34.36 c.55.3.2 33655 2fbhA 146 35.35 a.4.5.28 133245 2ifuA 307 36.38 1fsiA 189 37.97 d.61.1.1 39536 1dfoA 417 38.44 c.67.1.4 34480 3bwnA 391 38.84 1ci9A 392 39.33 e.3.1.1 64767 2grmA 317 40.07 1wstA 417 40.62 c.67.1.1 121244 1iugA 352 41.45 c.67.1.3 90699 1r45A 204 42.56 d.166.1.1 111683 2fd5A 180 42.75 a.4.1.9,a.121.1.1 133291,133292 1lnwA 147 43.23 a.4.5.28 78104 1bj4A 470 43.49 c.67.1.4 34479 1yqsA 349 43.88 e.3.1.1 123899 1fxlA 167 44.18 d.58.7.1,d.58.7.1 39183,39184 1bjnA 360 45.31 c.67.1.4 34469 3cedA 98 45.58 2r40D 266 46.56 1lj9A 144 46.60 a.4.5.28 78035 1z67A 135 47.26 a.259.1.1 124507 1jf9A 408 47.44 c.67.1.3 62931 1i6xA 209 48.28 a.4.5.4,b.82.3.2 83673,83674 2ze7A 253 48.60 2uv0E 175 49.38 3bhpA 60 49.73 2agaA 190 50.24 1ykjA 394 50.26 2qjcA 262 50.87 2ii2A 310 52.05 1b8gA 429 52.35 c.67.1.4 34499 2qr4A 587 52.43 1kqpA 271 52.64 c.26.2.1 72883 2b5hA 200 52.95 b.82.1.19 127894 1j7gA 144 53.35 c.110.1.1 84130 1frb 315 53.57 1rec 201 53.94 1s1eA 224 54.31 a.39.1.5 112007 1ynuA 473 54.45 c.67.1.4 123762 2dtjA 178 55.43 1ofgA 381 56.27 c.2.1.3,d.81.1.5 30064,39979 1a0pA 290 56.87 a.60.9.1,d.163.1.1 18105,42165 2ho1A 252 57.12 2vooA 193 57.50 2c40A 312 57.96 2zfyA 234 58.38 1jgsA 138 58.39 a.4.5.28 66683 2q4xA 221 58.59 a.132.1.3 139880 2oa6A 320 58.61 1in6A 334 59.39 a.4.5.11,c.37.1.20 62601,62602 2ekgA 327 60.31 2vdeA 460 61.06 1uehA 253 61.31 c.101.1.1 99259 1a0p 290 62.02 2ftzA 284 62.54 1k3eA 156 62.80 d.198.1.1 68103 1qbkB 890 63.43 a.118.1.1 19127 1kmkA 406 64.14 c.67.1.3 68696 2bv6A 142 64.45 2hldG 278 65.05 2fji1 399 65.30 1rv3A 483 65.56 c.67.1.4 105101 1xnfA 275 65.67 a.118.8.1 115580 1w23A 360 67.67 c.67.1.4 114088 2f6lA 166 67.92 a.130.1.4 133049 1u5tA 233 68.58 a.4.5.54,a.4.5.54 107684,107685 1s95A 333 69.91 d.159.1.3 105375 1rtqA 299 70.23 c.56.5.4 97819 1omrA 201 71.10 a.39.1.5 93349 1a4pA 96 71.41 a.39.1.2 17176 1yakA 263 72.11 a.132.1.3 122833 1kl1A 419 72.53 c.67.1.4 72663 2fq4A 192 72.61 a.4.1.9,a.121.1.1 133937,133938 1j98A 157 73.24 d.185.1.2 62755 1yadA 221 73.50 2e2rA 244 74.22 2rgxA 206 74.30 1qlsA 99 74.61 a.39.1.2 17185 2cxaA 256 74.81 d.108.1.6 130993 1wgzA 510 74.93 1s69A 124 75.63 a.1.1.1 105305 1n45A 233 75.86 a.132.1.1 79981 2fbiA 142 76.25 a.4.5.28 133246 3btxA 204 76.30 1hw5A 210 78.55 a.4.5.4,b.82.3.2 16098,28137 1ksoA 101 79.31 a.39.1.2 72926 2q91A 101 79.71 2di4A 238 80.61 a.269.1.1 131522 2z20A 432 81.21 2hejA 323 81.47 1pwgA 349 81.67 e.3.1.1 104340 1lk9A 448 81.83 c.67.1.1 78057 3bjhA 119 82.31 1gy8A 397 83.07 c.2.1.2 83376 2yviA 111 83.33 1pg5A 299 83.63 c.78.1.1,c.78.1.1 104146,104147 2cohA 202 83.85 a.4.5.4,b.82.3.2 130677,130678 1mhyB 395 84.46 a.25.1.2 16781 2h4pA 394 84.63 2d4yA 463 87.44 1xjzA 233 87.67 a.132.1.1 122049 2ct9A 208 88.25 1vbjA 281 89.48 1pu6A 218 89.65 a.96.1.5 95123