# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 4.34e-53 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 8.88e-52 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 1.98e-50 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 2.52e-50 1kb9A 431 5.67e-50 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 1.46e-49 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 3.46e-44 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 3.65e-43 2fgeA 995 2.58e-38 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 3.72e-38 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 4.25e-38 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 2.89e-37 1tqxA 227 0.9815 c.1.2.2 112614 2o36A 674 1.454 1wyuB 474 2.361 c.67.1.7 121453 1ki1B 352 2.766 a.87.1.1,b.55.1.1 72497,72498 2douA 376 3.797 1rtwA 220 3.847 a.132.1.3 97823 1h1yA 228 3.911 c.1.2.2 76506 2agaA 190 4.041 2qcxA 263 4.288 1i1iP 681 5.022 d.92.1.5 40297 1v33A 366 5.560 d.264.1.1 100278 1vp4A 425 6.342 c.67.1.1 113935 2z20A 432 7.030 1xi3A 215 7.072 c.1.3.1 109601 1d2fA 390 7.077 c.67.1.3 34411 1s4bP 674 7.215 d.92.1.5 105252 1tyhA 248 7.283 a.132.1.3 107458 2q83A 346 7.849 1f37A 110 8.192 c.47.1.11 33088 1t3iA 420 9.614 c.67.1.3 106354 2hdyA 440 10.79 2q4uA 272 10.80 1c7nA 399 11.42 c.67.1.3 34413 1gdeA 389 11.54 c.67.1.1 60456 2hejA 323 11.86 1mi3A 322 11.91 c.1.7.1 91274 2dtvA 397 12.00 1uxjA 309 12.41 c.2.1.5,d.162.1.1 108112,108113 3bhwA 209 12.59 1yakA 263 13.07 a.132.1.3 122833 2hoxA 427 14.51 c.67.1.1 136644 1tltA 319 15.72 c.2.1.3,d.81.1.5 107135,107136 1wovA 250 17.94 a.132.1.1 121124 1qo0D 196 17.95 c.23.1.3 31125 1xbyA 216 18.71 c.1.2.3 121846 1u4qA 322 19.22 a.7.1.1,a.7.1.1,a.7.1.1 113024,113025,113026 1m7yA 435 19.75 c.67.1.4 78761 1vfrA 218 19.96 d.90.1.1 40247 1hw6A 278 21.59 c.1.7.1 61296 2i06A 309 21.86 1dpgA 485 21.88 c.2.1.3,d.81.1.5 30074,39989 1ynpA 317 22.15 2v7pA 310 22.99 1jh6A 189 23.19 d.61.1.1 66707 1ynuA 473 24.20 c.67.1.4 123762 1l5aA 436 24.67 c.43.1.2,c.43.1.2 75923,75924 2qipA 165 25.07 2ewdA 317 25.37 1xi9A 406 25.64 c.67.1.1 115355 1yzbA 182 28.91 1lc5A 364 29.32 c.67.1.1 73827 2grmA 317 30.42 2f82A 450 30.59 2vg0A 227 30.68 2q4eA 362 30.68 2dztA 248 31.21 1lk9A 448 32.13 c.67.1.1 78057 1j32A 388 32.34 c.67.1.1 77067 2rffA 111 32.70 2zg5A 397 32.94 2gb3A 409 33.74 c.67.1.1 134903 1in4A 334 34.02 a.4.5.11,c.37.1.20 62597,62598 2ou3A 161 34.07 1frb 315 34.08 2hehA 387 34.36 1txdA 385 34.53 a.87.1.1,b.55.1.1 107422,107423 2ibtA 421 35.24 c.66.1.27,d.287.1.1 137205,137206 1f44A 324 36.47 a.60.9.1,d.163.1.1 64982,64983 1s1pA 331 36.77 c.1.7.1 98350 1iugA 352 37.57 c.67.1.3 90699 3d1uA 288 39.14 2ag5A 246 39.92 c.2.1.2 126719 2cblA 305 40.51 a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 3buvA 326 40.55 1z72A 225 40.66 a.132.1.3 124583 1wstA 417 43.48 c.67.1.1 121244 2agtA 319 43.53 2qg7A 458 44.02 1qwkA 317 44.22 c.1.7.1 96482 2z15A 130 44.41 1b8gA 429 45.06 c.67.1.4 34499 1vbjA 281 46.64 2ho1A 252 47.26 3bwnA 391 47.49 1u08A 386 49.41 c.67.1.1 107543 1m32A 366 49.54 c.67.1.3 78508 3ceaA 346 51.80 2f2gA 221 52.00 a.132.1.3 132816 2bbrA 195 52.45 1qsoA 149 53.17 d.108.1.1 40812 1m6sA 347 53.33 c.67.1.1 78701 1vqqA 646 54.21 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1ad4A 266 54.28 c.1.21.1 29670 1rpxA 230 55.07 c.1.2.2 28536 1bjnA 360 56.56 c.67.1.4 34469 1jf9A 408 56.72 c.67.1.3 62931 1a5zA 319 57.79 c.2.1.5,d.162.1.1 30181,42148 2gauA 232 58.18 a.4.5.4,b.82.3.2 134894,134895 1qgrA 876 59.30 a.118.1.1 19119 2h1vA 310 60.37 1yioA 208 60.61 a.4.6.2,c.23.1.1 123326,123327 1jf3A 147 62.11 a.1.1.2 71642 1bw0A 416 62.58 c.67.1.1 34385 2do9A 115 62.97 1ur5A 309 64.15 c.2.1.5,d.162.1.1 99807,99808 1xfrA 128 66.72 1w7lA 422 67.23 c.67.1.1 109226 3cx5D 248 67.84 3bosA 242 68.85 1ovaA 386 68.95 e.1.1.1 42619 1qsaA 618 69.31 a.118.5.1,d.2.1.6 19182,36988 1g5hA 454 73.16 c.51.1.1,d.104.1.1 60270,60271 1qkkA 155 74.33 c.23.1.1 31104 1yadA 221 75.44 2yviA 111 76.15 1j6wA 175 76.21 d.185.1.2 62663 2ccmA 191 76.41 2p4fA 299 77.04 2csgA 424 77.57 b.82.2.12 130768 1r45A 204 81.21 d.166.1.1 111683 2tpsA 227 81.46 c.1.3.1 28591 2bgsA 344 82.28 2dtjA 178 83.54 1e8aA 91 83.61 a.39.1.2 17188 1s35A 214 85.04 a.7.1.1,a.7.1.1 98420,98421 3ce7A 107 85.13 1dbhA 354 86.66 a.87.1.1,b.55.1.1 18514,26967 2ao0A 324 88.48