# List of top-scoring protein chains for T0427.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hr6B 443 6.35e-50 1be3A d.185.1.1,d.185.1.1 61166,61167 1hr7B 443 1.92e-49 1be3A d.185.1.1,d.185.1.1 61182,61183 2g47A 990 2.90e-47 2jg4A 990 3.96e-47 1bccA 446 4.86e-47 1be3A d.185.1.1,d.185.1.1 58946,58947 1qcrA 446 1.19e-45 1be3A d.185.1.1,d.185.1.1 59025,59026 1ppjA 446 1.30e-45 d.185.1.1,d.185.1.1 104252,104253 1sqbA 480 2.95e-45 d.185.1.1,d.185.1.1 105890,105891 1q2lA 939 4.26e-44 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 1hr6A 475 1.91e-40 1hr6A d.185.1.1,d.185.1.1 61164,61165 2fgeA 995 1.54e-36 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1qcrB 423 1.87e-31 1be3B d.185.1.1,d.185.1.1 59027,59028 2bccB 422 2.50e-31 1be3B d.185.1.1,d.185.1.1 59051,59052 1ppjB 439 3.06e-31 d.185.1.1,d.185.1.1 104254,104255 1bccB 422 3.46e-31 1be3B d.185.1.1,d.185.1.1 58948,58949 1sqbB 453 4.38e-31 d.185.1.1,d.185.1.1 105892,105893 3cx5A 431 3.25e-30 1ezvA 430 2.46e-29 1be3A d.185.1.1,d.185.1.1 59541,59542 3cx5B 352 4.24e-15 1cqmA 101 5.69e-01 1ris d.58.14.1 39321 1qjhA 101 6.88e-01 1ris d.58.14.1 39326 2bdqA 224 1.62e+00 1j02A 267 4.02e+00 a.132.1.1 90732 2q22A 139 4.12e+00 1rbsA 155 4.65e+00 c.55.3.1 33558 1dvgA 267 5.83e+00 1qq8A a.132.1.1 19510 3c3jA 384 6.61e+00 1tiqA 180 7.39e+00 d.108.1.1 107010 1e6cA 173 7.68e+00 1shkA c.37.1.2 59296 1jl1A 155 8.09e+00 c.55.3.1 66821 2bvzA 101 8.60e+00 2i0xA 85 9.09e+00 2bkkB 169 9.52e+00 1rdbA 155 1.03e+01 c.55.3.1 33561 1mj0A 166 1.04e+01 k.37.1.1 79174 1sk0A 140 1.04e+01 1lavA 155 1.09e+01 c.55.3.1 33554 1g1xA 98 1.13e+01 1ris d.58.14.1 39327 1qd7E 97 1.13e+01 1ris i.1.1.3 45868 1risA 101 1.15e+01 d.58.14.1 39314 1f21A 155 1.17e+01 2rn2 c.55.3.1 33550 2gzmA 267 1.18e+01 2aj4A 548 1.23e+01 1h2vZ 156 1.26e+01 d.58.7.1 76595 1l2fA 369 1.28e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 91044,91045,91046,91047 1rdaA 155 1.29e+01 c.55.3.1 33567 1rdcA 155 1.30e+01 c.55.3.1 33568 1d2fA 390 1.31e+01 1d2fA c.67.1.3 34411 1wtbA 79 1.32e+01 d.58.7.1 121256 1jxbA 155 1.34e+01 c.55.3.1 71931 1lawA 155 1.37e+01 c.55.3.1 33557 1j8fA 323 1.41e+01 1j8fA c.31.1.5 62738 1iqtA 75 1.52e+01 d.58.7.1 71279 2rn2A 155 1.55e+01 c.55.3.1 33551 1jzwA 140 1.62e+01 c.47.1.12 67883 1rbvA 155 1.62e+01 c.55.3.1 33553 1sk2A 140 1.64e+01 1hh2P 344 1.66e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1j9bA 141 1.69e+01 c.47.1.12 66459 3b55A 451 1.74e+01 2gtgA 83 1.82e+01 a.64.1.1 135649 1s3dA 138 1.85e+01 1q90A 292 1.91e+01 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 1s3cA 141 1.92e+01 2z1gA 155 1.98e+01 2qsjA 154 2.07e+01 1iayA 428 2.08e+01 1b8gA c.67.1.4 62130 2p2cP 169 2.16e+01 2gwmA 200 2.16e+01 2eyuA 261 2.17e+01 2pkfA 334 2.19e+01 2gwlA 200 2.25e+01 1jcrA 377 2.31e+01 a.118.6.1 66506 1o1tA 380 2.31e+01 a.118.6.1 86551 2z20A 432 2.32e+01 3bnyA 320 2.32e+01 1o5mA 377 2.33e+01 a.118.6.1 92507 1sk1A 140 2.36e+01 1svxA 169 2.46e+01 k.37.1.1 106058 1uc6A 109 2.46e+01 b.1.2.1 107766 1kvaA 155 2.47e+01 c.55.3.1 33559 1xr0B 129 2.47e+01 b.55.1.2 115858 1f20A 435 2.51e+01 b.43.4.1,c.25.1.4 64932,64933 1i9dA 141 2.70e+01 c.47.1.12 66098 1kvcA 155 2.72e+01 c.55.3.1 33560 1rbrA 155 2.77e+01 c.55.3.1 33556 1x0mA 403 2.83e+01 c.67.1.1 121550 2ckoA 390 2.91e+01 2j8sD 169 2.94e+01 1cs8A 316 2.99e+01 1cs8A d.3.1.1 37065 1tzvA 142 3.00e+01 a.79.1.1 107526 1q1vA 70 3.15e+01 a.159.4.1 104479 2z1jA 155 3.24e+01 2bxjA 101 3.29e+01 1m12A 84 3.29e+01 a.64.1.1 84745 1rbuA 155 3.37e+01 c.55.3.1 33552 2z9aA 88 3.38e+01 2z1iA 155 3.41e+01 2qypA 91 3.44e+01 1wovA 250 3.44e+01 a.132.1.1 121124 1e2vA 251 3.55e+01 1hcz b.2.6.1,b.84.2.2 22468,28254 2vh8A 562 3.55e+01 1e2zA 251 3.59e+01 1hcz b.2.6.1,b.84.2.2 22477,28263 1cfmA 251 3.62e+01 1hcz b.2.6.1,b.84.2.2 22471,28257 1vlwA 217 3.63e+01 c.1.10.1 108868 1e2wA 251 3.64e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1v5sA 126 3.71e+01 d.129.6.1 108384 1kvbA 155 3.72e+01 c.55.3.1 33562 2ggtA 164 3.78e+01 c.47.1.10 135156 1cjlA 312 3.84e+01 d.3.1.1 37066 1sd8A 141 3.86e+01 2fug2 181 4.01e+01 1paqA 189 4.03e+01 a.118.1.14 94413 1x42A 232 4.05e+01 c.108.1.1 121677 2cokA 113 4.09e+01 2oieA 111 4.10e+01 a.204.1.2 139092 1rbtA 155 4.16e+01 c.55.3.1 33555 2qruA 274 4.17e+01 2gnxA 344 4.17e+01 1btmA 252 4.23e+01 1amk c.1.1.1 28513 2gqkA 173 4.24e+01 1v9sA 208 4.26e+01 c.61.1.1 119894 2qy1A 330 4.33e+01 1xk1A 233 4.35e+01 a.132.1.1 122053 1louA 101 4.38e+01 1ris d.58.14.1 39323 1shkA 173 4.46e+01 1shkA c.37.1.2 31932 2q4pA 170 4.49e+01 2h6fA 382 4.50e+01 a.118.6.1 136185 2f0yA 379 4.52e+01 a.118.6.1 132681 1yhuB 144 4.53e+01 1wp0A 165 4.59e+01 c.47.1.10 121132 2btmA 252 4.63e+01 1amk c.1.1.1 28511 1o73A 144 4.63e+01 c.47.1.10 86638 1ml4A 308 4.70e+01 c.78.1.1,c.78.1.1 79255,79256 2jgqA 233 4.74e+01 1aupA 449 4.76e+01 c.2.1.7,c.58.1.1 30222,33870 1wa3A 205 4.80e+01 c.1.10.1 120802 3b7cA 122 4.86e+01 2bkxA 242 4.90e+01 2db2A 119 4.91e+01 2a5zA 262 4.97e+01 b.29.1.24 126184 2onlC 406 5.01e+01 d.144.1.7 139160 1nekC 129 5.10e+01 f.21.2.2 80431 3crdA 100 5.23e+01 a.77.1.3 18429 1xk3A 233 5.26e+01 a.132.1.1 115400 2pt7G 152 5.29e+01 1r6bX 758 5.30e+01 a.174.1.1,c.37.1.20,c.37.1.20 104818,104819,104820 1rc6A 261 5.32e+01 b.82.1.11 97287 1ctmA 250 5.48e+01 b.2.6.1,b.84.2.2 22465,28251 2z1hA 155 5.49e+01 1hczA 252 5.56e+01 b.2.6.1,b.84.2.2 22464,28250 2qxzA 330 5.66e+01 2qx3A 330 5.79e+01 1awcB 153 5.81e+01 1bd8 d.211.1.1 19156 1wshA 155 5.89e+01 c.55.3.1 114849 1v7pC 200 5.96e+01 c.62.1.1 108408 1zynA 202 5.97e+01 c.47.1.2,c.47.1.2 125838,125839 1gxsB 158 5.98e+01 1xqsC 191 6.06e+01 1u2xA 474 6.08e+01 c.72.1.3 107622 1aoxA 203 6.12e+01 1aoxA c.62.1.1 34151 2gszA 363 6.31e+01 3b5iA 374 6.32e+01 1r9cA 139 6.89e+01 d.32.1.2 97255 1u0oC 208 6.99e+01 2ejnA 153 7.03e+01 a.101.1.1,a.101.1.1 132279,132280 1hmjA 78 7.09e+01 d.78.1.1 39752 1n45A 233 7.28e+01 a.132.1.1 79981 1exbE 103 7.41e+01 1t1dA d.42.1.2 38643 1xhoA 148 7.48e+01 d.79.1.2 115301 1zuoA 186 7.51e+01 d.20.1.1 125680 2edbA 116 7.52e+01 1g15A 155 7.53e+01 2rn2 c.55.3.1 60197 1yewB 247 7.63e+01 1x5iA 126 7.71e+01 b.1.2.1 121710 1jkeA 145 7.73e+01 c.110.1.1 66791 2uunD 172 7.82e+01 2d9bA 109 7.86e+01 2g0iA 145 7.90e+01 1vh0A 161 7.96e+01 c.116.1.3 100626