Best Alignments for T0427

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1hr6B	1.3971e-68	1hr6B/T0427-1hr6B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
3cx5A	5.1256e-65	3cx5A/T0427-3cx5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ppjA	4.7216e-61	1ppjA/T0427-1ppjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
1kb9A	5.9580e-59	1kb9A/T0427-1kb9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
2g47A	2.5930e-57	2g47A/T0427-2g47A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ppjB	5.3159e-57	1ppjB/T0427-1ppjB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
1q2lA	4.7027e-54	1q2lA/T0427-1q2lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
2fgeA	8.3346e-54	2fgeA/T0427-2fgeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
1hr6A	1.2823e-45	1hr6A/T0427-1hr6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
1kb9B	1.4962e-43	1kb9B/T0427-1kb9B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
3cx5B	2.3375e-40	3cx5B/T0427-3cx5B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ezvA	1.9287e-27	1ezvA/T0427-1ezvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
1ezvB	8.5917e-20	1ezvB/T0427-1ezvB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
1qcrA	5.5883e-09	1qcrA/T0427-1qcrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
2i7qA	7.7994e+00	2i7qA/T0427-2i7qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1xi9A	1.3159e+01	1xi9A/T0427-1xi9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.67.1.1
1tyhA	1.7907e+01	1tyhA/T0427-1tyhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.132.1.3
1d2fA	2.2099e+01	1d2fA/T0427-1d2fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.67.1.3
2qcxA	2.8866e+01	2qcxA/T0427-2qcxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2p4fA	2.9103e+01	2p4fA/T0427-2p4fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001