Best Alignments for T0427

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1hr6B	3.2270e-54	1hr6B/T0427-1hr6B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
3cx5A	1.0223e-46	3cx5A/T0427-3cx5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qcrA	1.0291e-43	1qcrA/T0427-1qcrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
1ppjA	2.2038e-42	1ppjA/T0427-1ppjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
1ezvA	3.2325e-41	1ezvA/T0427-1ezvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
1hr6A	1.0251e-38	1hr6A/T0427-1hr6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
2g47A	3.1548e-38	2g47A/T0427-2g47A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3cx5B	3.7720e-38	3cx5B/T0427-3cx5B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ppjB	5.6382e-37	1ppjB/T0427-1ppjB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
1q2lA	4.6258e-36	1q2lA/T0427-1q2lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
2fgeA	3.2420e-35	2fgeA/T0427-2fgeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
1kb9A	5.2199e-35	1kb9A/T0427-1kb9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
1kb9B	1.8729e-27	1kb9B/T0427-1kb9B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
1ezvB	8.6950e-27	1ezvB/T0427-1ezvB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.185.1.1 d.185.1.1
1gdeA	1.0893e+01	1gdeA/T0427-1gdeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.67.1.1
1oy3D	1.1652e+01	1oy3D/T0427-1oy3D-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.211.1.1
2z20A	1.1679e+01	2z20A/T0427-2z20A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1xi9A	1.5453e+01	1xi9A/T0427-1xi9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.67.1.1
1w7lA	1.7782e+01	1w7lA/T0427-1w7lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.67.1.1
1u08A	1.8942e+01	1u08A/T0427-1u08A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.67.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001