# List of top-scoring protein chains for T0427.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hr6B	443	4.92e-26	d.185.1.1,d.185.1.1	61166,61167
1hr7B	443	7.22e-26	d.185.1.1,d.185.1.1	61182,61183
1bccA	446	1.61e-22	d.185.1.1,d.185.1.1	58946,58947
1qcrA	446	2.25e-22	d.185.1.1,d.185.1.1	59025,59026
1sqbA	480	2.29e-22	d.185.1.1,d.185.1.1	105890,105891
1ppjA	446	2.29e-22	d.185.1.1,d.185.1.1	104252,104253
1hr6A	475	2.56e-18	d.185.1.1,d.185.1.1	61164,61165
2bccB	422	1.39e-16	d.185.1.1,d.185.1.1	59051,59052
1bccB	422	1.57e-16	d.185.1.1,d.185.1.1	58948,58949
1qcrB	423	1.90e-16	d.185.1.1,d.185.1.1	59027,59028
1ppjB	439	1.92e-16	d.185.1.1,d.185.1.1	104254,104255
1sqbB	453	1.94e-16	d.185.1.1,d.185.1.1	105892,105893
3cx5A	431	9.72e-14		
1ezvA	430	2.88e-13	d.185.1.1,d.185.1.1	59541,59542
2jg4A	990	1.16e-11		
2g47A	990	1.91e-11		
1q2lA	939	2.08e-11	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2fgeA	995	6.58e-09	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	133430,133431,133432,133433
3cx5B	352	1.97e-06		
1cqmA	101	23.89	d.58.14.1	39321
1qjhA	101	38.61	d.58.14.1	39326
2eyuA	261	42.00		
2gzmA	267	51.37		
2bvzA	101	82.06