# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.89e-35 d.185.1.1,d.185.1.1 61166,61167 1hr6A 475 4.01e-34 d.185.1.1,d.185.1.1 61164,61165 1qcrA 446 8.74e-34 d.185.1.1,d.185.1.1 59025,59026 3cx5A 431 9.94e-34 1ppjA 446 1.10e-33 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 1.48e-33 d.185.1.1,d.185.1.1 104254,104255 1kb9A 431 1.21e-32 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 1.59e-32 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 3.92e-30 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 5.26e-29 3cx5B 352 2.90e-27 1kb9B 352 1.56e-26 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 4.47e-25 d.185.1.1,d.185.1.1 59543,59544 2fgeA 995 4.67e-25 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1c7nA 399 16.40 c.67.1.3 34413 1tq4A 413 18.85 c.37.1.8 107201 2z20A 432 19.70 2dpoA 319 21.46 1gdeA 389 25.06 c.67.1.1 60456 1zd0A 150 35.02 d.329.1.1 124927 1fe0A 68 35.33 d.58.17.1 39345 1f0yA 302 35.53 a.100.1.3,c.2.1.6 18793,30197 1qqcA 773 36.47 c.55.3.5,e.8.1.1 33724,43013 1w7lA 422 37.50 c.67.1.1 109226 1zzkA 82 37.64 d.51.1.1 125909 1xi9A 406 39.98 c.67.1.1 115355 1tyhA 248 42.24 a.132.1.3 107458 2nogA 173 42.77 1qupA 222 45.36 b.1.8.1,d.58.17.1 22301,39352 1xknA 355 49.51 d.126.1.6 115414 2fcwA 109 57.95 a.13.1.1 133288 1s69A 124 59.66 a.1.1.1 105305 2hp0A 466 61.35 2qcoA 210 62.12 1yozA 116 62.51 a.253.1.1 123796 1yakA 263 65.07 a.132.1.3 122833 2bv6A 142 66.37 2im5A 394 68.77 2qcxA 263 70.03 2hdhA 293 71.79 a.100.1.3,c.2.1.6 18795,30199 2v75A 104 72.04 2yviA 111 73.50 1v96A 149 73.53 c.120.1.1 119877 1svsA 353 74.57 c.37.1.8 106051 1q7zA 566 76.66 c.1.21.2,c.1.26.1 96090,96091 1pbtA 244 77.64 c.124.1.1 94416 1dpeA 507 79.59 c.94.1.1 35799 3bhpA 60 85.46 1zcaA 359 88.28 a.66.1.1,c.37.1.8 124897,124898