# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 5.79e-27 d.185.1.1,d.185.1.1 61166,61167 1hr6A 475 5.73e-26 d.185.1.1,d.185.1.1 61164,61165 1ppjA 446 1.16e-25 d.185.1.1,d.185.1.1 104252,104253 1qcrA 446 1.18e-25 d.185.1.1,d.185.1.1 59025,59026 1ppjB 439 1.27e-25 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 1.30e-25 1kb9A 431 7.74e-25 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 9.09e-25 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 9.14e-23 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 5.20e-22 3cx5B 352 1.24e-20 1kb9B 352 5.00e-20 d.185.1.1,d.185.1.1 77313,77314 2fgeA 995 3.19e-19 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1ezvB 352 8.15e-19 d.185.1.1,d.185.1.1 59543,59544 1gdeA 389 20.09 c.67.1.1 60456 1c7nA 399 20.96 c.67.1.3 34413 1svsA 353 21.12 c.37.1.8 106051 2z20A 432 22.87 1zzkA 82 25.25 d.51.1.1 125909 1qqcA 773 25.62 c.55.3.5,e.8.1.1 33724,43013 1qupA 222 27.61 b.1.8.1,d.58.17.1 22301,39352 1tq4A 413 28.02 c.37.1.8 107201 1w7lA 422 28.63 c.67.1.1 109226 1pvdA 537 32.58 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1fe0A 68 35.35 d.58.17.1 39345 2puhA 286 39.51 1xi9A 406 48.70 c.67.1.1 115355 2dpoA 319 49.78 1j5kA 89 50.58 d.51.1.1 71565 1tadA 324 51.52 a.66.1.1,c.37.1.8 18194,32077 1us0A 316 53.35 c.1.7.1 99850 1zuaX 317 55.31 1j96A 323 56.19 c.1.7.1 71616 2rhwA 283 59.88 2pujA 286 65.17 1jqoA 970 67.39 c.1.12.3 77160 1f0yA 302 68.76 a.100.1.3,c.2.1.6 18793,30197 1pydA 556 71.67 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1zd0A 150 72.68 d.329.1.1 124927 2yviA 111 72.84 2og1A 286 73.38 1x4pA 66 75.74 1dpeA 507 77.77 c.94.1.1 35799 1tyhA 248 78.93 a.132.1.3 107458 1vbjA 281 80.46 2nogA 173 81.49 1zcbA 362 83.65 a.66.1.1,c.37.1.8 124901,124902 1a4pA 96 84.98 a.39.1.2 17176 1u5tA 233 88.80 a.4.5.54,a.4.5.54 107684,107685 1zcaA 359 88.98 a.66.1.1,c.37.1.8 124897,124898