# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hr6B	443	4.97e-25	d.185.1.1,d.185.1.1	61166,61167
1hr6A	475	3.49e-24	d.185.1.1,d.185.1.1	61164,61165
3cx5A	431	6.30e-24		
1ppjB	439	6.62e-24	d.185.1.1,d.185.1.1	104254,104255
1ppjA	446	6.71e-24	d.185.1.1,d.185.1.1	104252,104253
1qcrA	446	8.81e-24	d.185.1.1,d.185.1.1	59025,59026
1kb9A	431	5.14e-23	d.185.1.1,d.185.1.1	77311,77312
1ezvA	430	6.11e-23	d.185.1.1,d.185.1.1	59541,59542
1q2lA	939	2.69e-21	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2g47A	990	1.49e-20		
3cx5B	352	9.65e-20		
1kb9B	352	3.28e-19	d.185.1.1,d.185.1.1	77313,77314
1ezvB	352	4.06e-18	d.185.1.1,d.185.1.1	59543,59544
2fgeA	995	4.74e-18	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	133430,133431,133432,133433
2dpoA	319	29.60		
1zzkA	82	31.83	d.51.1.1	125909
2z20A	432	32.47		
1c7nA	399	33.80	c.67.1.3	34413
1qupA	222	34.59	b.1.8.1,d.58.17.1	22301,39352
1f0yA	302	34.89	a.100.1.3,c.2.1.6	18793,30197
1fe0A	68	35.04	d.58.17.1	39345
1qqcA	773	37.18	c.55.3.5,e.8.1.1	33724,43013
1gdeA	389	46.88	c.67.1.1	60456
2nogA	173	49.48		
1tq4A	413	50.42	c.37.1.8	107201
1s69A	124	54.06	a.1.1.1	105305
2hdhA	293	54.37	a.100.1.3,c.2.1.6	18795,30199
1idrA	136	55.97	a.1.1.1	62301
2bv6A	142	57.81		
1yakA	263	58.56	a.132.1.3	122833
1a6i	217	58.66		
1tyhA	248	59.08	a.132.1.3	107458
2viaA	405	64.87		
1dpeA	507	68.01	c.94.1.1	35799
1v96A	149	69.35	c.120.1.1	119877
2qcxA	263	74.44		
1g6uA	48	76.64	k.9.1.1	46425
1jqoA	970	77.11	c.1.12.3	77160
2bkkA	264	85.17		
2gfnA	209	85.42	a.4.1.9,a.121.1.1	135101,135102