# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hr6B	443	7.40e-25	d.185.1.1,d.185.1.1	61166,61167
1hr6A	475	4.55e-24	d.185.1.1,d.185.1.1	61164,61165
3cx5A	431	8.03e-24		
1ppjB	439	1.01e-23	d.185.1.1,d.185.1.1	104254,104255
1qcrA	446	1.03e-23	d.185.1.1,d.185.1.1	59025,59026
1ppjA	446	1.04e-23	d.185.1.1,d.185.1.1	104252,104253
1kb9A	431	6.13e-23	d.185.1.1,d.185.1.1	77311,77312
1ezvA	430	7.05e-23	d.185.1.1,d.185.1.1	59541,59542
1q2lA	939	3.20e-21	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2g47A	990	1.92e-20		
3cx5B	352	1.23e-19		
1kb9B	352	3.91e-19	d.185.1.1,d.185.1.1	77313,77314
1ezvB	352	4.87e-18	d.185.1.1,d.185.1.1	59543,59544
2fgeA	995	6.77e-18	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	133430,133431,133432,133433
1zzkA	82	28.28	d.51.1.1	125909
2dpoA	319	31.52		
1f0yA	302	31.64	a.100.1.3,c.2.1.6	18793,30197
1qupA	222	31.77	b.1.8.1,d.58.17.1	22301,39352
1c7nA	399	31.88	c.67.1.3	34413
1tq4A	413	34.29	c.37.1.8	107201
2z20A	432	36.15		
1qqcA	773	40.60	c.55.3.5,e.8.1.1	33724,43013
1gdeA	389	41.73	c.67.1.1	60456
1fe0A	68	45.28	d.58.17.1	39345
2nogA	173	47.54		
1idrA	136	49.11	a.1.1.1	62301
2hdhA	293	54.78	a.100.1.3,c.2.1.6	18795,30199
1w7lA	422	58.61	c.67.1.1	109226
1a6i	217	59.44		
1s69A	124	59.79	a.1.1.1	105305
2qcoA	210	61.49		
1yakA	263	61.96	a.132.1.3	122833
1tyhA	248	62.34	a.132.1.3	107458
2viaA	405	62.63		
1v96A	149	63.56	c.120.1.1	119877
2bv6A	142	68.39		
2puhA	286	68.64		
1g6uA	48	73.80	k.9.1.1	46425
1jqoA	970	74.54	c.1.12.3	77160
2qcxA	263	80.21		
2bkkA	264	81.80		
1xi9A	406	83.54	c.67.1.1	115355
1dpeA	507	84.38	c.94.1.1	35799