# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hr6B	443	6.43e-24	d.185.1.1,d.185.1.1	61166,61167
1hr6A	475	4.10e-23	d.185.1.1,d.185.1.1	61164,61165
3cx5A	431	6.65e-23		
1ppjA	446	7.43e-23	d.185.1.1,d.185.1.1	104252,104253
1qcrA	446	7.45e-23	d.185.1.1,d.185.1.1	59025,59026
1ppjB	439	7.63e-23	d.185.1.1,d.185.1.1	104254,104255
1kb9A	431	5.10e-22	d.185.1.1,d.185.1.1	77311,77312
1ezvA	430	5.73e-22	d.185.1.1,d.185.1.1	59541,59542
1q2lA	939	1.82e-20	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2g47A	990	9.41e-20		
3cx5B	352	5.04e-19		
1kb9B	352	1.49e-18	d.185.1.1,d.185.1.1	77313,77314
1ezvB	352	1.85e-17	d.185.1.1,d.185.1.1	59543,59544
2fgeA	995	2.49e-17	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	133430,133431,133432,133433
1f0yA	302	25.38	a.100.1.3,c.2.1.6	18793,30197
2dpoA	319	25.85		
1zzkA	82	30.91	d.51.1.1	125909
1qupA	222	31.45	b.1.8.1,d.58.17.1	22301,39352
2z20A	432	35.41		
1c7nA	399	39.00	c.67.1.3	34413
2hdhA	293	40.27	a.100.1.3,c.2.1.6	18795,30199
2nogA	173	42.87		
1tq4A	413	43.52	c.37.1.8	107201
1fe0A	68	44.77	d.58.17.1	39345
1qqcA	773	50.63	c.55.3.5,e.8.1.1	33724,43013
1a6i	217	58.26		
1gdeA	389	60.30	c.67.1.1	60456
1tyhA	248	60.86	a.132.1.3	107458
1idrA	136	63.51	a.1.1.1	62301
2bv6A	142	66.25		
1dpeA	507	70.25	c.94.1.1	35799
2qcoA	210	70.67		
1yakA	263	71.95	a.132.1.3	122833
2viaA	405	73.44		
1g6uA	48	74.59	k.9.1.1	46425
1v96A	149	76.01	c.120.1.1	119877
2qcxA	263	83.24		
1xknA	355	85.30	d.126.1.6	115414
2dobA	83	86.32		
1s69A	124	87.07	a.1.1.1	105305
1jqoA	970	87.87	c.1.12.3	77160
2bkkA	264	89.03		
1upkA	341	89.36	a.118.1.15	99758
1w7lA	422	89.92	c.67.1.1	109226