# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hr6B	443	2.00e-35	d.185.1.1,d.185.1.1	61166,61167
1hr6A	475	1.07e-33	d.185.1.1,d.185.1.1	61164,61165
1ppjA	446	2.36e-33	d.185.1.1,d.185.1.1	104252,104253
1ppjB	439	2.50e-33	d.185.1.1,d.185.1.1	104254,104255
3cx5A	431	2.43e-32		
1kb9A	431	4.40e-32	d.185.1.1,d.185.1.1	77311,77312
1ezvA	430	6.79e-32	d.185.1.1,d.185.1.1	59541,59542
1qcrA	446	2.37e-31	d.185.1.1,d.185.1.1	59025,59026
1q2lA	939	4.30e-28	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2g47A	990	7.18e-27		
3cx5B	352	9.78e-26		
1kb9B	352	3.34e-25	d.185.1.1,d.185.1.1	77313,77314
1ezvB	352	1.21e-23	d.185.1.1,d.185.1.1	59543,59544
2fgeA	995	1.21e-22	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	133430,133431,133432,133433
2nogA	173	5.071		
2z20A	432	6.536		
1vbjA	281	9.921		
1xi9A	406	11.33	c.67.1.1	115355
1gdeA	389	13.64	c.67.1.1	60456
1zuaX	317	15.24		
1qqcA	773	19.64	c.55.3.5,e.8.1.1	33724,43013
1fe0A	68	20.39	d.58.17.1	39345
1us0A	316	21.57	c.1.7.1	99850
3buvA	326	21.79		
1c7nA	399	23.54	c.67.1.3	34413
1ofcX	304	25.30	a.4.1.3,a.4.1.13,a.187.1.1	92826,92827,92828
2bgsA	344	29.06		
1wovA	250	33.94	a.132.1.1	121124
1j96A	323	39.72	c.1.7.1	71616
1w7lA	422	43.88	c.67.1.1	109226
2dobA	83	45.35		
2i79A	172	46.69		
2fcwA	109	49.32	a.13.1.1	133288
2z0dB	125	52.52	d.15.1.3	140096
1zgdA	312	55.25		
2endA	138	57.12	a.18.1.1	16400
1nxuA	333	57.68	c.122.1.1	86389
1u08A	386	61.28	c.67.1.1	107543
1kid	203	62.04		
2ao0A	324	64.64		
1ads	315	64.93		
1f0yA	302	65.57	a.100.1.3,c.2.1.6	18793,30197
1afsA	323	66.18	c.1.7.1	28694
1dpeA	507	70.44	c.94.1.1	35799
1f4pA	147	73.05	c.23.5.1	59651
1b8iB	63	75.22	a.4.1.1	16011
2dpoA	319	75.79		
1iyrA	111	78.29	a.164.1.1	76973
2im5A	394	81.15		
1bw0A	416	81.43	c.67.1.1	34385
1yozA	116	81.49	a.253.1.1	123796
2rhsA	294	82.50		
1yizA	429	84.70	c.67.1.1	123375
1tr1A	447	88.30	c.1.8.4	28957
2hejA	323	89.39