# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hr6B	443	2.74e-31	d.185.1.1,d.185.1.1	61166,61167
1hr6A	475	4.01e-30	d.185.1.1,d.185.1.1	61164,61165
3cx5A	431	8.35e-30		
1ppjA	446	8.49e-30	d.185.1.1,d.185.1.1	104252,104253
1ppjB	439	1.02e-29	d.185.1.1,d.185.1.1	104254,104255
1qcrA	446	1.69e-29	d.185.1.1,d.185.1.1	59025,59026
1kb9A	431	1.09e-28	d.185.1.1,d.185.1.1	77311,77312
1ezvA	430	1.28e-28	d.185.1.1,d.185.1.1	59541,59542
1q2lA	939	1.66e-26	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2g47A	990	1.34e-25		
3cx5B	352	3.08e-24		
1kb9B	352	1.22e-23	d.185.1.1,d.185.1.1	77313,77314
1ezvB	352	3.75e-22	d.185.1.1,d.185.1.1	59543,59544
2fgeA	995	4.34e-22	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	133430,133431,133432,133433
1c7nA	399	13.05	c.67.1.3	34413
1gdeA	389	16.39	c.67.1.1	60456
1f0yA	302	20.66	a.100.1.3,c.2.1.6	18793,30197
1tq4A	413	25.18	c.37.1.8	107201
2dpoA	319	28.31		
1qupA	222	29.30	b.1.8.1,d.58.17.1	22301,39352
1zzkA	82	29.52	d.51.1.1	125909
2z20A	432	33.50		
1fe0A	68	38.07	d.58.17.1	39345
1s69A	124	38.64	a.1.1.1	105305
1w7lA	422	42.38	c.67.1.1	109226
2nogA	173	46.82		
1xi9A	406	47.96	c.67.1.1	115355
1v96A	149	50.69	c.120.1.1	119877
2hdhA	293	52.19	a.100.1.3,c.2.1.6	18795,30199
1zd0A	150	53.16	d.329.1.1	124927
1j55A	95	53.44	a.39.1.2	77078
3bhpA	60	55.35		
2bv6A	142	55.67		
2yviA	111	55.81		
2im5A	394	61.99		
2fcwA	109	69.51	a.13.1.1	133288
2dobA	83	73.09		
1qqcA	773	75.41	c.55.3.5,e.8.1.1	33724,43013
1yozA	116	75.58	a.253.1.1	123796
1idrA	136	77.56	a.1.1.1	62301