# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.05e-52 d.185.1.1,d.185.1.1 61166,61167 1hr6A 475 5.81e-52 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 3.61e-50 d.185.1.1,d.185.1.1 104254,104255 1ppjA 446 6.23e-50 d.185.1.1,d.185.1.1 104252,104253 3cx5A 431 9.02e-50 1qcrA 446 1.07e-48 d.185.1.1,d.185.1.1 59025,59026 1kb9A 431 2.87e-47 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 4.71e-47 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 1.22e-43 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 6.41e-42 3cx5B 352 7.08e-40 1kb9B 352 9.68e-38 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 4.47e-35 d.185.1.1,d.185.1.1 59543,59544 2fgeA 995 3.03e-34 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1qqcA 773 0.3510 c.55.3.5,e.8.1.1 33724,43013 1xknA 355 0.9240 d.126.1.6 115414 1r30A 369 1.656 c.1.28.1 96895 1gdeA 389 2.796 c.67.1.1 60456 1q8iA 783 4.182 c.55.3.5,e.8.1.1 96208,96209 1ex1A 605 4.376 c.1.8.7,c.23.11.1 29013,31347 1tq4A 413 5.636 c.37.1.8 107201 2gsoA 393 6.083 2cmuA 342 6.796 2qneA 495 9.258 1xi9A 406 9.572 c.67.1.1 115355 2ps2A 371 10.87 1bifA 469 14.31 c.37.1.7,c.60.1.4 31961,34003 2dpoA 319 14.59 2nuwA 288 14.73 1tubA 440 14.90 c.32.1.1,d.79.2.1 31751,39803 1f0yA 302 15.55 a.100.1.3,c.2.1.6 18793,30197 1q7zA 566 16.66 c.1.21.2,c.1.26.1 96090,96091 1zzkA 82 18.42 d.51.1.1 125909 1j79A 347 19.49 c.1.9.4 62675 2bv6A 142 19.50 1qw9A 502 20.15 b.71.1.2,c.1.8.3 96466,96467 1pjr 724 20.39 1vhuA 211 21.15 c.50.1.2 100703 1w7lA 422 22.52 c.67.1.1 109226 1r6fA 310 23.95 e.46.1.1 97149 2qcoA 210 24.68 2i5gA 325 25.31 1qupA 222 25.65 b.1.8.1,d.58.17.1 22301,39352 1a0i 348 25.74 2cvzA 289 25.97 a.100.1.1,c.2.1.6 130890,130891 2bkkA 264 26.24 1hl9A 449 28.50 b.71.1.3,c.1.8.11 90650,90651 2viaA 405 28.55 1gox 370 30.58 1dpeA 507 31.40 c.94.1.1 35799 2fcwA 109 31.44 a.13.1.1 133288 3bsoA 510 32.30 2nogA 173 32.39 1akyA 220 32.81 c.37.1.1,g.41.2.1 31896,45197 2hdhA 293 33.27 a.100.1.3,c.2.1.6 18795,30199 1y8qA 346 34.17 1s69A 124 34.27 a.1.1.1 105305 2qezA 455 34.64 2hoxA 427 39.64 c.67.1.1 136644 1pc3A 350 39.98 c.94.1.1 104102 3csvA 333 40.72 2p8bA 369 43.83 1qvtA 194 44.52 a.4.1.9,a.121.1.1 104602,104603 3b8mA 280 46.36 1j55A 95 47.23 a.39.1.2 77078 3bofA 566 47.58 1idrA 136 47.92 a.1.1.1 62301 2om6A 235 48.49 2obfA 289 48.76 2pgeA 377 49.14 1j96A 323 49.84 c.1.7.1 71616 2yviA 111 50.12 1a3wA 500 50.19 b.58.1.1,c.1.12.1,c.49.1.1 27060,29288,33142 1txnA 328 50.24 d.248.1.1 112779 1uby 367 52.53 1fjgB 256 53.14 c.23.15.1 31400 2h0rA 216 54.37 2rjoA 332 54.45 1l8nA 679 54.90 c.1.8.10,d.92.2.2 84564,84565 1r1hA 696 55.02 d.92.1.4 104756 2i6uA 307 55.14 1qs0A 407 55.37 c.36.1.11 31829 2o7iA 592 55.45 2jfgA 445 55.45 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2ptzA 432 58.47 1xkyA 301 59.52 c.1.10.1 122094 1vlpA 441 59.56 d.41.2.2,c.1.17.2 108840,108841 2z20A 432 61.65 1x42A 232 62.02 c.108.1.1 121677 1ml4A 308 62.75 c.78.1.1,c.78.1.1 79255,79256 2dobA 83 63.60 1u2zA 433 64.35 c.66.1.31 107626 3bn1A 373 64.38 2aaxA 275 64.70 2qfjA 216 64.80 1bw0A 416 65.13 c.67.1.1 34385 1fe0A 68 65.74 d.58.17.1 39345 1zgdA 312 66.29 1c7nA 399 66.59 c.67.1.3 34413 1ccwB 483 66.95 c.1.19.2 29646 2higA 487 71.54 1yozA 116 71.72 a.253.1.1 123796 1wohA 305 71.91 c.42.1.1 109446 1oy3D 282 71.99 d.211.1.1 87554 2jgqA 233 72.38 1qhtA 775 72.44 c.55.3.5,e.8.1.1 33722,43011 1yakA 263 73.17 a.132.1.3 122833 2gfnA 209 74.09 a.4.1.9,a.121.1.1 135101,135102 2pmzA 880 74.44 1z91A 147 75.27 a.4.5.28 124736 1auoA 218 76.30 c.69.1.14 34716 1j32A 388 76.59 c.67.1.1 77067 2jj7A 186 79.01 1pbtA 244 79.28 c.124.1.1 94416 1vkpA 383 79.30 d.126.1.6 108686 1x38A 602 79.70 c.1.8.7,c.23.11.1 121655,121656 1gowA 489 80.49 c.1.8.4 28981 3bhpA 60 80.99 1lk9A 448 82.97 c.67.1.1 78057 1qguB 519 84.14 c.92.2.3 35626 2agtA 319 84.54 1v96A 149 84.61 c.120.1.1 119877 2ex0A 399 85.82 c.87.1.9 132494 1l9cA 389 89.24 c.3.1.2,d.16.1.3 77815,77816