# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 7.88e-33 d.185.1.1,d.185.1.1 61166,61167 1hr6A 475 1.12e-31 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 2.26e-31 1ppjA 446 3.03e-31 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 3.39e-31 d.185.1.1,d.185.1.1 104254,104255 1qcrA 446 4.34e-31 d.185.1.1,d.185.1.1 59025,59026 1kb9A 431 3.01e-30 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 4.01e-30 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 7.17e-28 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 8.16e-27 3cx5B 352 1.50e-25 1kb9B 352 6.68e-25 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 2.58e-23 d.185.1.1,d.185.1.1 59543,59544 2fgeA 995 4.21e-23 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1c7nA 399 12.54 c.67.1.3 34413 1f0yA 302 13.14 a.100.1.3,c.2.1.6 18793,30197 1gdeA 389 13.77 c.67.1.1 60456 1tq4A 413 21.65 c.37.1.8 107201 1zzkA 82 22.74 d.51.1.1 125909 1qupA 222 23.53 b.1.8.1,d.58.17.1 22301,39352 1w7lA 422 23.65 c.67.1.1 109226 2dpoA 319 23.73 2z20A 432 26.01 2hdhA 293 30.10 a.100.1.3,c.2.1.6 18795,30199 1xi9A 406 33.19 c.67.1.1 115355 2nogA 173 34.84 1s69A 124 39.38 a.1.1.1 105305 1fe0A 68 44.48 d.58.17.1 39345 1j55A 95 48.06 a.39.1.2 77078 1zd0A 150 52.56 d.329.1.1 124927 2yviA 111 57.26 1v96A 149 58.98 c.120.1.1 119877 1idrA 136 61.55 a.1.1.1 62301 2im5A 394 64.99 1tyhA 248 67.00 a.132.1.3 107458 1j5kA 89 71.13 d.51.1.1 71565 1i9gA 280 72.30 c.66.1.13 62090 2ge7A 108 72.81 d.254.1.2 135049 1vlpA 441 73.98 d.41.2.2,c.1.17.2 108840,108841 3bhpA 60 74.69 1i4nA 251 78.67 c.1.2.4 71114 2bv6A 142 81.21 2gb3A 409 84.13 c.67.1.1 134903 2fcwA 109 87.18 a.13.1.1 133288 1fhvA 323 89.92 c.1.11.2,d.54.1.1 29235,38879