# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 2.80e-49 d.185.1.1,d.185.1.1 61166,61167 1qcrA 446 6.67e-48 d.185.1.1,d.185.1.1 59025,59026 1hr6A 475 1.07e-47 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 9.80e-47 1ppjB 439 1.10e-46 d.185.1.1,d.185.1.1 104254,104255 1ppjA 446 1.51e-46 d.185.1.1,d.185.1.1 104252,104253 1kb9A 431 3.52e-45 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 5.04e-45 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 1.29e-41 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 2.11e-39 3cx5B 352 1.13e-38 1kb9B 352 2.75e-37 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 6.58e-35 d.185.1.1,d.185.1.1 59543,59544 2fgeA 995 4.94e-34 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1qqcA 773 7.315 c.55.3.5,e.8.1.1 33724,43013 1tq4A 413 13.83 c.37.1.8 107201 1qupA 222 14.87 b.1.8.1,d.58.17.1 22301,39352 1i9gA 280 18.18 c.66.1.13 62090 2dpoA 319 20.88 1j96A 323 22.19 c.1.7.1 71616 1f0yA 302 22.96 a.100.1.3,c.2.1.6 18793,30197 1zzkA 82 25.17 d.51.1.1 125909 1dpeA 507 27.65 c.94.1.1 35799 1fe0A 68 30.83 d.58.17.1 39345 1c7nA 399 32.68 c.67.1.3 34413 1gdeA 389 33.22 c.67.1.1 60456 2hdhA 293 35.19 a.100.1.3,c.2.1.6 18795,30199 1s69A 124 39.05 a.1.1.1 105305 1zuaX 317 44.00 1w7lA 422 50.19 c.67.1.1 109226 1xi9A 406 52.22 c.67.1.1 115355 2z20A 432 52.90 1bifA 469 57.06 c.37.1.7,c.60.1.4 31961,34003 1j5kA 89 57.43 d.51.1.1 71565 1tyhA 248 59.28 a.132.1.3 107458 3be4A 217 60.98 1g8yA 279 61.83 c.37.1.11 32302 2nooA 502 63.30 2yviA 111 63.68 1xknA 355 65.35 d.126.1.6 115414 2gfnA 209 67.93 a.4.1.9,a.121.1.1 135101,135102 1zcbA 362 69.09 a.66.1.1,c.37.1.8 124901,124902 1zd0A 150 69.29 d.329.1.1 124927 1c20A 128 75.29 a.4.3.1 16079 1uj2A 252 76.93 c.37.1.6 99452 1svsA 353 78.50 c.37.1.8 106051 1zcaA 359 79.77 a.66.1.1,c.37.1.8 124897,124898 2o7iA 592 79.91 1v96A 149 82.72 c.120.1.1 119877 2z0dB 125 86.53 d.15.1.3 140096