# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.49e-39 d.185.1.1,d.185.1.1 61166,61167 1hr6A 475 3.50e-38 d.185.1.1,d.185.1.1 61164,61165 1qcrA 446 7.74e-38 d.185.1.1,d.185.1.1 59025,59026 1ppjA 446 2.07e-37 d.185.1.1,d.185.1.1 104252,104253 3cx5A 431 2.08e-37 1ppjB 439 2.46e-37 d.185.1.1,d.185.1.1 104254,104255 1kb9A 431 2.72e-36 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 4.25e-36 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 1.56e-33 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 3.73e-32 3cx5B 352 9.60e-31 1kb9B 352 9.06e-30 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 7.40e-28 d.185.1.1,d.185.1.1 59543,59544 2fgeA 995 9.13e-28 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1c7nA 399 8.722 c.67.1.3 34413 1f0yA 302 12.98 a.100.1.3,c.2.1.6 18793,30197 2dpoA 319 15.98 1gdeA 389 19.47 c.67.1.1 60456 1qupA 222 20.59 b.1.8.1,d.58.17.1 22301,39352 1fe0A 68 24.15 d.58.17.1 39345 1zzkA 82 27.22 d.51.1.1 125909 1tq4A 413 27.80 c.37.1.8 107201 1w7lA 422 28.80 c.67.1.1 109226 1xi9A 406 30.05 c.67.1.1 115355 1dpeA 507 32.18 c.94.1.1 35799 2z20A 432 34.96 2hdhA 293 35.31 a.100.1.3,c.2.1.6 18795,30199 1pvdA 537 41.01 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2nogA 173 46.33 1svsA 353 47.35 c.37.1.8 106051 1zcbA 362 53.35 a.66.1.1,c.37.1.8 124901,124902 1j5kA 89 56.59 d.51.1.1 71565 2qcoA 210 56.91 2yviA 111 58.50 1zd0A 150 61.21 d.329.1.1 124927 2im5A 394 62.31 1qqcA 773 63.38 c.55.3.5,e.8.1.1 33724,43013 2ftuA 118 68.51 a.13.1.1 134082 1zcaA 359 68.59 a.66.1.1,c.37.1.8 124897,124898 1cc8A 73 69.10 d.58.17.1 39343 1tyhA 248 69.65 a.132.1.3 107458 1v96A 149 72.78 c.120.1.1 119877 1x4pA 66 73.91 1i5kC 30 75.20 1e8cA 498 76.06 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1s69A 124 78.97 a.1.1.1 105305 1zlqA 502 82.38 c.94.1.1 125253 2fcwA 109 86.55 a.13.1.1 133288 2gfnA 209 87.54 a.4.1.9,a.121.1.1 135101,135102 1c20A 128 87.96 a.4.3.1 16079 1tadA 324 89.22 a.66.1.1,c.37.1.8 18194,32077 1jqoA 970 89.73 c.1.12.3 77160 2dobA 83 89.88