# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 6.75e-37 d.185.1.1,d.185.1.1 61166,61167 1qcrA 446 1.08e-35 d.185.1.1,d.185.1.1 59025,59026 1hr6A 475 1.15e-35 d.185.1.1,d.185.1.1 61164,61165 1ppjA 446 5.43e-35 d.185.1.1,d.185.1.1 104252,104253 3cx5A 431 5.47e-35 1ppjB 439 5.47e-35 d.185.1.1,d.185.1.1 104254,104255 1kb9A 431 6.80e-34 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 9.88e-34 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 2.85e-31 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 5.27e-30 3cx5B 352 5.55e-29 1kb9B 352 4.15e-28 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 2.14e-26 d.185.1.1,d.185.1.1 59543,59544 2fgeA 995 4.61e-26 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1tq4A 413 13.19 c.37.1.8 107201 1c7nA 399 15.35 c.67.1.3 34413 1qupA 222 15.55 b.1.8.1,d.58.17.1 22301,39352 1qqcA 773 17.32 c.55.3.5,e.8.1.1 33724,43013 2z20A 432 19.09 2dpoA 319 19.80 1fe0A 68 24.45 d.58.17.1 39345 1gdeA 389 26.63 c.67.1.1 60456 1f0yA 302 31.09 a.100.1.3,c.2.1.6 18793,30197 1zzkA 82 32.28 d.51.1.1 125909 1xi9A 406 33.47 c.67.1.1 115355 1w7lA 422 37.54 c.67.1.1 109226 1jqoA 970 45.29 c.1.12.3 77160 2qcoA 210 48.73 1pvdA 537 49.65 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2nogA 173 50.81 1dpeA 507 51.03 c.94.1.1 35799 1s69A 124 58.94 a.1.1.1 105305 1c20A 128 59.05 a.4.3.1 16079 1j5kA 89 59.20 d.51.1.1 71565 1tyhA 248 60.30 a.132.1.3 107458 2yviA 111 68.42 2hdhA 293 71.53 a.100.1.3,c.2.1.6 18795,30199 1zcaA 359 74.12 a.66.1.1,c.37.1.8 124897,124898 2nooA 502 74.88 1wovA 250 77.72 a.132.1.1 121124 1cc8A 73 79.55 d.58.17.1 39343 2v75A 104 80.90 1xknA 355 81.90 d.126.1.6 115414 1svsA 353 83.42 c.37.1.8 106051 1yozA 116 83.55 a.253.1.1 123796 1yakA 263 84.44 a.132.1.3 122833 2qcxA 263 85.00 2fcwA 109 85.75 a.13.1.1 133288 1zcbA 362 85.91 a.66.1.1,c.37.1.8 124901,124902 2im5A 394 87.56 1zd0A 150 89.29 d.329.1.1 124927