# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 8.14e-41 d.185.1.1,d.185.1.1 61166,61167 1hr6A 475 3.37e-39 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 6.35e-39 d.185.1.1,d.185.1.1 104254,104255 1ppjA 446 1.07e-38 d.185.1.1,d.185.1.1 104252,104253 3cx5A 431 1.47e-38 1qcrA 446 4.03e-38 d.185.1.1,d.185.1.1 59025,59026 1kb9A 431 1.05e-37 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 1.54e-37 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 8.83e-33 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 3cx5B 352 2.31e-31 1kb9B 352 1.84e-30 d.185.1.1,d.185.1.1 77313,77314 2g47A 990 2.38e-30 1ezvB 352 3.62e-28 d.185.1.1,d.185.1.1 59543,59544 2fgeA 995 1.35e-24 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 2z20A 432 1.300 1gdeA 389 4.810 c.67.1.1 60456 1c7nA 399 11.54 c.67.1.3 34413 2bgsA 344 11.66 1vbjA 281 12.64 1zuaX 317 13.69 1us0A 316 15.47 c.1.7.1 99850 1f0yA 302 15.59 a.100.1.3,c.2.1.6 18793,30197 2dpoA 319 17.44 1zcjA 463 18.78 2gb3A 409 21.95 c.67.1.1 134903 1xi9A 406 22.38 c.67.1.1 115355 1tyhA 248 23.10 a.132.1.3 107458 1yozA 116 27.48 a.253.1.1 123796 3buvA 326 28.55 1j96A 323 33.19 c.1.7.1 71616 2hejA 323 34.87 2hdhA 293 38.78 a.100.1.3,c.2.1.6 18795,30199 2dr1A 386 39.31 2ao0A 324 39.49 1bak 119 41.14 1qqcA 773 45.13 c.55.3.5,e.8.1.1 33724,43013 2agtA 319 45.50 1j98A 157 46.13 d.185.1.2 62755 1yakA 263 46.87 a.132.1.3 122833 1bebA 162 49.12 b.60.1.1 27115 1bw0A 416 49.81 c.67.1.1 34385 1u08A 386 50.97 c.67.1.1 107543 1s1pA 331 51.52 c.1.7.1 98350 1yizA 429 54.38 c.67.1.1 123375 2i79A 172 58.58 1e4iA 447 58.59 c.1.8.4 59225 5nul 138 61.39 1zgdA 312 63.34 2pidA 356 65.31 1tr1A 447 65.37 c.1.8.4 28957 1ljrA 244 65.59 a.45.1.1,c.47.1.5 17707,33001 1cj5A 162 68.85 b.60.1.1 27124 2yviA 111 68.91 1jmoA 480 70.51 e.1.1.1 77138 1vlpA 441 71.83 d.41.2.2,c.1.17.2 108840,108841 1w7lA 422 71.98 c.67.1.1 109226 2douA 376 73.30 2csgA 424 75.46 b.82.2.12 130768 1dpeA 507 78.34 c.94.1.1 35799 1ads 315 78.86 1ds6B 180 86.76 b.1.18.8 21898 1h0cA 392 89.26 c.67.1.3 83424