# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hr6B	443	1.55e-39	d.185.1.1,d.185.1.1	61166,61167
1qcrA	446	3.68e-38	d.185.1.1,d.185.1.1	59025,59026
1hr6A	475	9.15e-38	d.185.1.1,d.185.1.1	61164,61165
1ppjB	439	1.48e-37	d.185.1.1,d.185.1.1	104254,104255
1ppjA	446	3.60e-37	d.185.1.1,d.185.1.1	104252,104253
3cx5A	431	6.28e-37		
1kb9A	431	4.01e-36	d.185.1.1,d.185.1.1	77311,77312
1ezvA	430	4.93e-36	d.185.1.1,d.185.1.1	59541,59542
1q2lA	939	2.42e-32	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	118731,118732,118733,118734
2g47A	990	1.11e-30		
3cx5B	352	2.56e-29		
1kb9B	352	2.15e-28	d.185.1.1,d.185.1.1	77313,77314
2fgeA	995	1.37e-26	d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1	133430,133431,133432,133433
1ezvB	352	2.77e-26	d.185.1.1,d.185.1.1	59543,59544
2z20A	432	1.441		
1gdeA	389	4.914	c.67.1.1	60456
1vbjA	281	7.165		
1w7lA	422	8.032	c.67.1.1	109226
1xi9A	406	9.518	c.67.1.1	115355
1f0yA	302	10.67	a.100.1.3,c.2.1.6	18793,30197
1zuaX	317	10.85		
2gb3A	409	13.78	c.67.1.1	134903
1qqcA	773	14.90	c.55.3.5,e.8.1.1	33724,43013
2hdhA	293	18.64	a.100.1.3,c.2.1.6	18795,30199
1j96A	323	18.83	c.1.7.1	71616
2dpoA	319	22.38		
2g2cA	167	24.62	c.57.1.1	134535
1us0A	316	28.44	c.1.7.1	99850
1zcjA	463	29.10		
3buvA	326	29.69		
1c7nA	399	33.42	c.67.1.3	34413
1yozA	116	37.42	a.253.1.1	123796
2dr1A	386	37.56		
1u08A	386	37.73	c.67.1.1	107543
1poxA	585	37.75	c.31.1.3,c.36.1.5,c.36.1.9	31731,31793,31794
1s69A	124	38.43	a.1.1.1	105305
1yizA	429	42.79	c.67.1.1	123375
2yviA	111	42.91		
1nf2A	268	46.22	c.108.1.10	91849
2bgsA	344	49.17		
1zzkA	82	52.48	d.51.1.1	125909
1bebA	162	54.26	b.60.1.1	27115
2hoxA	427	54.61	c.67.1.1	136644
1yb4A	295	62.50		
1zgdA	312	62.73		
2ao0A	324	64.40		
1zd0A	150	66.28	d.329.1.1	124927
2fcwA	109	68.92	a.13.1.1	133288
2agtA	319	70.40		
1ads	315	76.77		
2viaA	405	82.18		
1gm6A	175	84.24	b.60.1.1	70272
1dpeA	507	84.91	c.94.1.1	35799
1fiqB	350	85.04	d.87.2.1,d.145.1.3	40229,41760
1g5tA	196	87.53	c.37.1.11	32366
1gnd	447	88.50