# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 5.22e-39 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 9.10e-38 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 1.81e-37 d.185.1.1,d.185.1.1 104254,104255 1hr6A 475 2.95e-36 d.185.1.1,d.185.1.1 61164,61165 1ezvA 430 9.46e-34 d.185.1.1,d.185.1.1 59541,59542 1kb9A 431 3.10e-33 d.185.1.1,d.185.1.1 77311,77312 3cx5A 431 8.00e-33 1qcrA 446 1.30e-29 d.185.1.1,d.185.1.1 59025,59026 1q2lA 939 5.39e-22 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 5.78e-22 2fgeA 995 4.64e-18 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 3cx5B 352 6.36e-18 1kb9B 352 3.59e-16 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 6.28e-15 d.185.1.1,d.185.1.1 59543,59544 2p4fA 299 4.151 2p8bA 369 10.32 2r7jA 317 12.13 1d3uB 201 18.48 a.74.1.2,a.74.1.2 18386,18387 1m9nA 613 19.63 c.24.1.3,c.97.1.4 78870,78871 2is6A 680 19.66 2hejA 323 20.65 1c9bA 207 21.72 a.74.1.2,a.74.1.2 18372,18373 2pgwA 384 23.27 1j09A 468 24.53 a.97.1.1,c.26.1.1 77025,77026 1j96A 323 24.71 c.1.7.1 71616 1aop 497 24.88 3cyjA 372 29.33 2gekA 406 30.39 1a0p 290 31.17 1g8mA 593 31.55 c.24.1.3,c.97.1.4 60371,60372 2zadA 345 31.89 1tkkA 366 32.46 c.1.11.2,d.54.1.1 107089,107090 1aopA 497 32.91 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 2ajtA 500 34.86 b.43.2.2,c.85.1.2 126894,126895 1a53 247 35.06 1hw6A 278 35.08 c.1.7.1 61296 2bg5A 324 35.70 1psdA 409 35.74 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1vcvA 226 36.28 c.1.10.1 119988 1xkyA 301 36.34 c.1.10.1 122094 1rdfA 267 38.47 c.108.1.3 104884 1dquA 538 38.77 c.1.12.7 29314 1hv8A 367 40.59 c.37.1.19,c.37.1.19 32405,32406 1dceB 331 40.85 a.102.4.3 18872 2qg7A 458 41.20 2es4D 332 41.36 3bk2A 562 41.47 1n4qB 377 42.80 a.102.4.3 91636 2jhnA 295 43.50 2rfgA 297 45.26 1l9vA 317 46.58 d.13.2.1,d.216.1.1 73760,73761 1eswA 500 47.53 c.1.8.1 59500 1xbyA 216 47.73 c.1.2.3 121846 2grmA 317 49.07 2qezA 455 49.65 1io2A 213 49.75 c.55.3.1 62612 1qlpA 394 50.45 e.1.1.1 42628 1vecA 206 50.66 c.37.1.19 100575 1v5xA 203 52.13 c.1.2.4 100377 1dj0A 264 52.40 d.265.1.1 90337 1b89A 449 53.00 a.118.1.3 19138 3buvA 326 53.69 2b43A 526 53.83 1rzmA 338 54.09 c.1.10.4 105137 1volA 204 54.55 a.74.1.2,a.74.1.2 18370,18371 1tw0A 157 55.36 d.129.3.1 119364 1us0A 316 55.42 c.1.7.1 99850 1vz6A 393 55.73 d.154.1.2 108949 1qamA 244 55.83 c.66.1.24 34220 1kaeA 434 56.09 c.82.1.2 72247 2i57A 438 57.01 1n45A 233 58.28 a.132.1.1 79981 1fhvA 323 60.13 c.1.11.2,d.54.1.1 29235,38879 2h78A 302 61.43 1nal1 297 62.12 1aisB 200 66.52 a.74.1.2,a.74.1.2 18384,18385 1pii 452 67.11 3b9qA 302 68.75 1nrwA 288 70.92 c.108.1.10 86128 1mpgA 282 71.64 a.96.1.3,d.129.1.2 18747,41296 1fezA 256 71.85 c.108.1.3 43343 2i4iA 417 72.65 2ovlA 371 73.07 2gdqA 382 74.31 c.1.11.2,d.54.1.1 135020,135021 2d1cA 496 75.41 1hqcA 324 75.49 a.4.5.11,c.37.1.20 16127,32424 1nu5A 370 76.32 c.1.11.2,d.54.1.1 92183,92184 1pz1A 333 76.43 c.1.7.1 95390 1euaA 213 77.29 c.1.10.1 29155 3borA 237 78.04 1zjaA 557 78.07 2g30A 258 78.30 b.1.10.1,d.105.1.1 134546,134547 2agtA 319 78.62 5tmpA 213 78.75 c.37.1.1 31931 1ybeA 449 78.85 c.1.17.2,d.41.2.2 116605,116606 1jilA 420 79.98 c.26.1.1 66745 1twfK 120 80.66 d.74.3.2 112736 1j98A 157 80.83 d.185.1.2 62755 2q09A 416 81.39 1kidA 203 81.41 c.8.5.1 30771 1w78A 422 84.15 1e42A 258 84.98 b.1.10.1,d.105.1.1 22316,40792 1zczA 464 85.95 c.24.1.3,c.97.1.4 124923,124924 1o4uA 285 86.28 c.1.17.1,d.41.2.1 86624,86625 1zgdA 312 86.58 1jmoA 480 87.16 e.1.1.1 77138 1jffB 445 89.08 c.32.1.1,d.79.2.1 62934,62935 1kw3B 292 89.67 d.32.1.3,d.32.1.3 77549,77550 2puzA 419 89.95