# List of top-scoring protein chains for T0427.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 7.06e-60 d.185.1.1,d.185.1.1 61166,61167 1hr7B 443 3.03e-59 d.185.1.1,d.185.1.1 61182,61183 1bccA 446 1.86e-58 d.185.1.1,d.185.1.1 58946,58947 2g47A 990 3.73e-56 2jg4A 990 5.54e-56 1qcrA 446 6.46e-56 d.185.1.1,d.185.1.1 59025,59026 1ppjA 446 6.66e-56 d.185.1.1,d.185.1.1 104252,104253 1sqbA 480 1.28e-55 d.185.1.1,d.185.1.1 105890,105891 1q2lA 939 1.48e-50 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 1hr6A 475 2.68e-49 d.185.1.1,d.185.1.1 61164,61165 2fgeA 995 3.29e-43 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1qcrB 423 3.78e-37 d.185.1.1,d.185.1.1 59027,59028 2bccB 422 7.40e-37 d.185.1.1,d.185.1.1 59051,59052 1bccB 422 1.17e-36 d.185.1.1,d.185.1.1 58948,58949 1ppjB 439 1.49e-36 d.185.1.1,d.185.1.1 104254,104255 1sqbB 453 2.57e-36 d.185.1.1,d.185.1.1 105892,105893 3cx5A 431 1.08e-35 1ezvA 430 1.26e-34 d.185.1.1,d.185.1.1 59541,59542 3cx5B 352 4.27e-20 1cqmA 101 0.7370 d.58.14.1 39321 1qjhA 101 1.119 d.58.14.1 39326 1d2fA 390 3.956 c.67.1.3 34411 1l2fA 369 5.647 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 91044,91045,91046,91047 1j02A 267 5.905 a.132.1.1 90732 2i06A 309 7.611 1hh2P 344 10.30 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 2pkfA 334 10.74 1h2vZ 156 11.28 d.58.7.1 76595 1tiqA 180 11.56 d.108.1.1 107010 1e6cA 173 11.59 c.37.1.2 59296 3c3jA 384 12.06 2bdqA 224 12.17 2bvzA 101 12.35 1dvgA 267 13.36 a.132.1.1 19510 2rjbA 455 14.16 2a2kA 175 14.34 1g1xA 98 14.57 d.58.14.1 39327 1qd7E 97 14.58 i.1.1.3 45868 1risA 101 15.01 d.58.14.1 39314 1rbsA 155 17.28 c.55.3.1 33558 2g8yA 385 17.34 2ifdA 175 17.60 2ifvA 175 18.30 1mo7A 213 18.61 d.220.1.1 85028 1qb0A 211 19.62 c.46.1.1 32699 2jfkA 433 22.28 1ymkA 175 22.85 c.46.1.1 123699 1cwtA 178 24.80 c.46.1.1 32702 1yewB 247 25.20 1w3iA 293 25.24 c.1.10.1 109152 1m4jA 142 25.79 d.109.1.2 78602 1w37A 294 26.34 c.1.10.1 109142 2fug2 181 28.78 1y13A 181 29.70 d.96.1.2 116319 1t8fA 164 29.93 d.2.1.3 112319 2cg8A 270 33.67 2nrrA 159 34.51 3crdA 100 36.95 a.77.1.3 18429 1qwkA 317 37.69 c.1.7.1 96482 1uc6A 109 37.85 b.1.2.1 107766 1xjjA 644 39.11 2i0xA 85 40.91 2qruA 274 42.02 1wtbA 79 43.87 d.58.7.1 121256 1rdbA 155 43.90 c.55.3.1 33561 1shkA 173 44.07 c.37.1.2 31932 2e18A 257 44.91 2qsjA 154 45.55 1mj0A 166 45.79 k.37.1.1 79174 1svxA 169 47.87 k.37.1.1 106058 1jl1A 155 48.18 c.55.3.1 66821 2ekgA 327 49.91 1iz2A 394 50.27 e.1.1.1 76975 1iqtA 75 50.60 d.58.7.1 71279 2ejnA 153 50.91 a.101.1.1,a.101.1.1 132279,132280 2cmaA 327 51.13 c.45.1.2 130618 2dh7A 105 51.42 2qy1A 330 51.53 2bxjA 101 51.86 1zunB 434 53.46 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 2gwmA 200 54.43 1sk2A 140 54.74 2nuwA 288 54.93 1paqA 189 55.71 a.118.1.14 94413 2gwlA 200 56.66 1s3dA 138 56.70 1lavA 155 56.74 c.55.3.1 33554 2ggtA 164 57.55 c.47.1.10 135156 1r4wA 226 57.69 c.47.1.13 97050 1qhbA 596 57.95 a.111.1.2 19055 1sk0A 140 59.21 2hu8A 582 59.63 b.69.7.2,c.69.1.33 136772,136773 1louA 101 59.82 d.58.14.1 39323 1ophA 394 60.61 e.1.1.1 93404 1uwiA 489 61.03 c.1.8.4 119759 2gqkA 173 61.08 1jxbA 155 61.61 c.55.3.1 71931 2r91A 286 63.42 2psjA 319 64.46 2nxqA 134 65.22 1yf1A 186 65.53 c.47.1.10 123032 2psdA 318 65.77 1eeoA 321 66.61 c.45.1.2 32655 2qygA 452 66.77 1f21A 155 67.16 c.55.3.1 33550 2vevA 321 67.28 1ptvA 321 67.46 c.45.1.2 32665 2im5A 394 67.52 1ptuA 321 67.58 c.45.1.2 32675 1l8gA 321 68.12 c.45.1.2 73689 1i1nA 226 69.32 c.66.1.7 71102 2bkxA 242 70.75 1rdaA 155 70.78 c.55.3.1 33567 1atuA 374 72.54 e.1.1.1 42636 1vl2A 421 72.58 c.26.2.1,d.210.1.1 108708,108709 1yexA 186 72.61 c.47.1.10 123021 1wp0A 165 73.06 c.47.1.10 121132 2yrnA 129 73.60 1bzcA 321 73.96 c.45.1.2 32670 1yf0A 186 74.51 c.47.1.10 123027 1o73A 144 75.19 c.47.1.10 86638 3brxA 317 76.51 2qx3A 330 76.54 2gtgA 83 76.67 a.64.1.1 135649 1i9dA 141 76.73 c.47.1.12 66098 1vlwA 217 76.82 c.1.10.1 108868 1lawA 155 77.51 c.55.3.1 33557 2qxzA 330 77.77 1jzwA 140 78.70 c.47.1.12 67883 1guzA 310 79.09 c.2.1.5,d.162.1.1 65586,65587 2psfA 310 79.20 1n00A 321 80.45 a.65.1.1 85241 1j9bA 141 81.19 c.47.1.12 66459 2uunD 172 81.32 2q22A 139 81.50 2uunB 172 81.65 1yepA 186 82.73 c.47.1.10 123016 1v71A 323 83.03 c.79.1.1 119859 1iruG 254 83.63 d.153.1.4 71358 1gvfA 286 83.91 c.1.10.2 70599 1gv0A 310 84.47 c.2.1.5,d.162.1.1 65594,65595 3d1cA 369 85.48 2rn2A 155 85.56 c.55.3.1 33551 1a5yA 330 85.93 c.45.1.2 32673 3ezaA 249 86.11 a.60.10.1,c.8.1.2 18112,30707 1rdcA 155 86.42 c.55.3.1 33568 2nrqA 159 88.15 1j8fA 323 89.12 c.31.1.5 62738