# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 3.89e-73 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 3.79e-72 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 2.49e-69 d.185.1.1,d.185.1.1 104254,104255 1hr6A 475 2.87e-69 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 3.11e-66 1kb9A 431 1.20e-64 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 1.68e-64 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 3.37e-63 2fgeA 995 4.40e-61 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 3.16e-50 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 1.29e-38 2i7qA 402 0.2706 1fchA 368 0.6426 a.118.8.1 19212 2okjA 504 0.8462 2dplA 308 0.9669 1s95A 333 1.549 d.159.1.3 105375 2ppqA 322 2.736 2ig7A 401 3.432 2ho1A 252 4.093 1wyuA 438 4.466 c.67.1.7 121452 2uy1A 493 5.010 3broA 141 5.583 1u69A 163 6.020 d.32.1.7 107699 2hcfA 234 8.650 c.108.1.6 136333 1fxlA 167 8.659 d.58.7.1,d.58.7.1 39183,39184 2r44A 331 9.775 2awiA 317 9.96 a.35.1.11,a.118.8.4 127435,127436 1xi9A 406 10.93 c.67.1.1 115355 2fbhA 146 11.12 a.4.5.28 133245 3b5oA 244 11.27 1zejA 293 11.34 2pkeA 251 11.81 2qmaA 497 13.43 3bpvA 138 13.82 2etxA 209 14.03 2hi0A 240 14.40 1jk7A 323 14.57 d.159.1.3 63144 2hp0A 466 14.61 4tmkA 213 14.91 c.37.1.1 31930 2v82A 212 15.10 2grmA 317 15.59 2pujA 286 15.97 1ya0A 497 16.73 a.118.8.1 122785 1vjeA 166 17.34 d.185.1.2 100807 1us0A 316 17.54 c.1.7.1 99850 2hr3A 147 18.20 a.4.5.28 136678 2hszA 243 20.20 c.108.1.6 136726 2rdpA 150 20.52 1foeA 377 20.55 a.87.1.1,b.55.1.1 18517,26969 1tyhA 248 21.36 a.132.1.3 107458 2fa5A 162 22.63 2anrA 178 22.80 1k3eA 156 23.42 d.198.1.1 68103 3c5iA 369 23.66 3boqA 160 24.39 2ethA 154 24.41 a.4.5.28 132358 2q4eA 362 24.93 1j98A 157 25.50 d.185.1.2 62755 2dtjA 178 26.15 1p3wA 404 27.61 c.67.1.3 87752 1pmmA 466 28.09 c.67.1.6 94901 2gxgA 146 28.45 2p4fA 299 28.71 1lnwA 147 28.90 a.4.5.28 78104 2qcxA 263 29.81 1wovA 250 30.67 a.132.1.1 121124 2dgmA 466 31.44 c.67.1.6 131508 2fbiA 142 31.98 a.4.5.28 133246 1h1yA 228 32.23 c.1.2.2 76506 2dgkA 452 32.26 2fbkA 181 33.44 a.4.5.28 133247 1lj9A 144 34.24 a.4.5.28 78035 2nnnA 140 34.38 3bjaA 139 34.53 1rcwA 231 35.09 a.132.1.4 97299 1n97A 389 35.59 a.104.1.1 80335 2nyxA 168 36.62 2chgA 226 37.10 3bddA 142 38.25 1ntyA 311 39.27 a.87.1.1,b.55.1.1 103873,103874 3bj6A 152 39.46 1qsaA 618 39.48 a.118.5.1,d.2.1.6 19182,36988 2fyfA 398 40.16 1j6wA 175 40.73 d.185.1.2 62663 1s3jA 155 41.54 a.4.5.28 98437 2gnxA 365 43.57 1d2fA 390 43.60 c.67.1.3 34411 2eu8A 216 43.79 1nw1A 429 44.70 d.144.1.8 86286 1zrnA 232 44.97 c.108.1.1 43323 1dceA 567 45.05 a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 1w3iA 293 45.85 c.1.10.1 109152 2fdrA 229 46.28 c.108.1.6 133319 1jv1A 505 46.77 c.68.1.5 71892 1z3xA 238 48.60 a.118.1.22,a.261.1.1 124416,124417 3bhpA 60 49.05 2rjoA 332 49.43 1hlvA 131 50.22 a.4.1.7,a.4.1.7 65854,65855 1fadA 99 50.48 a.77.1.2 18428 2d1eA 248 51.06 2a61A 145 51.91 a.4.5.28 126187 2ho3A 325 52.03 1l0bA 229 53.49 c.15.1.3,c.15.1.3 73391,73392 2bv6A 142 53.54 3caiA 406 53.64 1xd7A 145 54.31 a.4.5.55 109566 1dpgA 485 54.39 c.2.1.3,d.81.1.5 30074,39989 1xngA 268 54.45 c.26.2.1 122186 2e18A 257 54.78 2a5yB 549 54.81 1aisB 200 55.57 a.74.1.2,a.74.1.2 18384,18385 1bykA 255 55.68 c.93.1.1 35706 1txdA 385 56.39 a.87.1.1,b.55.1.1 107422,107423 2p2sA 336 56.39 1musA 477 56.48 c.55.3.4 79494 2graA 277 57.38 1vlmA 219 58.92 c.66.1.41 108836 2glxA 332 60.50 1yviA 149 62.70 a.24.10.2 124099 1kmqA 184 62.93 c.37.1.8 84412 1xnfA 275 63.07 a.118.8.1 115580 3csuA 310 66.88 c.78.1.1,c.78.1.1 35094,35095 1yakA 263 67.41 a.132.1.3 122833 2hlsA 243 68.55 1jyoA 130 68.95 d.198.1.1 67483 1t15A 214 69.02 c.15.1.3,c.15.1.3 99067,99068 3csvA 333 69.12 3bwdD 182 70.58 2i06A 309 71.15 1rtwA 220 71.45 a.132.1.3 97823 2bptA 861 73.46 a.118.1.1 128951 1yjsA 419 73.89 c.67.1.4 123461 1in4A 334 74.54 a.4.5.11,c.37.1.20 62597,62598 3bcxA 437 74.58 3bgvA 313 75.03 1twyA 290 77.63 c.94.1.1 112767 1xzoA 174 78.05 c.47.1.10 122474 1wdcC 156 78.06 a.39.1.5 17317 1t3iA 420 78.74 c.67.1.3 106354 1f07A 321 79.27 c.1.16.3 59560 1qz9A 416 79.85 c.67.1.3 96621 2fp1A 166 81.23 a.130.1.4 133891 2v6gA 364 82.75 1efyA 350 83.02 a.41.1.1,d.166.1.2 17413,42275 1s1eA 224 83.17 a.39.1.5 112007 1jrrA 382 83.61 e.1.1.1 63256 2i88A 191 84.27 2z0qA 346 84.62 3bjhA 119 86.42 1c4kA 730 86.77 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 8abpA 306 86.87 c.93.1.1 35647 3crrA 323 88.31 2qwwA 154 88.32 2ak3A 226 88.47 c.37.1.1,g.41.2.1 31892,45193 1c7nA 399 89.13 c.67.1.3 34413