# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 6.52e-74 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 3.26e-72 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 3.32e-70 d.185.1.1,d.185.1.1 104254,104255 1hr6A 475 6.43e-70 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 1.57e-66 1kb9A 431 4.27e-65 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 5.31e-65 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 6.20e-64 2fgeA 995 2.97e-61 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 5.72e-50 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 8.39e-39 2i7qA 402 0.2078 2dplA 308 0.8488 2okjA 504 1.315 1s95A 333 1.757 d.159.1.3 105375 1fchA 368 2.448 a.118.8.1 19212 2awiA 317 2.700 a.35.1.11,a.118.8.4 127435,127436 2ppqA 322 2.925 2uy1A 493 4.229 2r44A 331 4.962 1fxlA 167 5.735 d.58.7.1,d.58.7.1 39183,39184 3broA 141 6.488 1u69A 163 6.605 d.32.1.7 107699 2hszA 243 8.096 c.108.1.6 136726 1wyuA 438 8.745 c.67.1.7 121452 2eu8A 216 8.914 2ho1A 252 10.05 2pkeA 251 11.14 2grmA 317 11.69 2etxA 209 13.10 3b5oA 244 13.28 2q4eA 362 15.24 3bpvA 138 15.53 2nnnA 140 17.06 2fbhA 146 17.72 a.4.5.28 133245 1zejA 293 17.88 1d2fA 390 18.56 c.67.1.3 34411 4tmkA 213 18.59 c.37.1.1 31930 2hp0A 466 18.82 2hcfA 234 18.98 c.108.1.6 136333 3boqA 160 19.12 1foeA 377 20.32 a.87.1.1,b.55.1.1 18517,26969 2fyfA 398 21.14 1k3eA 156 21.55 d.198.1.1 68103 2anrA 178 22.04 2gnxA 365 22.42 2hr3A 147 22.60 a.4.5.28 136678 1f07A 321 23.19 c.1.16.3 59560 1jk7A 323 23.50 d.159.1.3 63144 2ig7A 401 23.54 3cjnA 162 24.13 1wovA 250 24.30 a.132.1.1 121124 1j98A 157 24.50 d.185.1.2 62755 2a5yB 549 24.51 2ethA 154 25.23 a.4.5.28 132358 2fa5A 162 26.60 2fbiA 142 28.04 a.4.5.28 133246 1xi9A 406 28.08 c.67.1.1 115355 1p3wA 404 28.70 c.67.1.3 87752 3c5iA 369 28.76 2ho3A 325 28.93 1lnwA 147 29.53 a.4.5.28 78104 1fadA 99 31.63 a.77.1.2 18428 1vjeA 166 31.87 d.185.1.2 100807 2dtjA 178 33.33 2glxA 332 33.86 1wz9A 375 34.71 2qmaA 497 34.72 1tyhA 248 35.10 a.132.1.3 107458 2pujA 286 35.73 3csvA 333 35.86 2rdpA 150 36.14 2fbkA 181 36.23 a.4.5.28 133247 1l0bA 229 36.78 c.15.1.3,c.15.1.3 73391,73392 2d2rA 245 36.96 2nyxA 168 37.01 2chgA 226 37.37 1pmmA 466 37.87 c.67.1.6 94901 1xd7A 145 38.86 a.4.5.55 109566 1yviA 149 39.42 a.24.10.2 124099 1dceA 567 39.92 a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 2gxgA 146 39.99 2d1eA 248 40.59 2dgkA 452 41.53 2hi0A 240 42.46 2graA 277 42.57 2e18A 257 43.38 3bjhA 119 43.83 3bjaA 139 44.20 2bv6A 142 45.29 1xngA 268 46.06 c.26.2.1 122186 3caiA 406 46.74 3bj6A 152 47.43 1z3xA 238 48.55 a.118.1.22,a.261.1.1 124416,124417 1ntyA 311 48.57 a.87.1.1,b.55.1.1 103873,103874 1j6wA 175 49.51 d.185.1.2 62663 1yjsA 419 49.54 c.67.1.4 123461 1jrrA 382 50.43 e.1.1.1 63256 1zrnA 232 51.18 c.108.1.1 43323 1txdA 385 51.28 a.87.1.1,b.55.1.1 107422,107423 1ya0A 497 52.16 a.118.8.1 122785 1jv1A 505 52.82 c.68.1.5 71892 2v82A 212 53.96 1lj9A 144 54.40 a.4.5.28 78035 1nw1A 429 56.50 d.144.1.8 86286 1rcwA 231 57.04 a.132.1.4 97299 2p4fA 299 58.21 2hoqA 241 58.84 1s3jA 155 59.29 a.4.5.28 98437 2pftA 571 59.44 1qz9A 416 60.72 c.67.1.3 96621 1yqgA 263 61.07 1us0A 316 61.80 c.1.7.1 99850 3c1vA 113 61.87 3bddA 142 63.12 1r5rA 119 63.14 a.39.2.1 97104 1t15A 214 64.68 c.15.1.3,c.15.1.3 99067,99068 1aisB 200 64.95 a.74.1.2,a.74.1.2 18384,18385 1xfrA 128 65.34 1dqeA 137 65.40 a.39.2.1 17388 1m45A 148 65.99 a.39.1.5 78598 1u3dA 509 66.06 a.99.1.1,c.28.1.1 107638,107639 2dgmA 466 66.53 c.67.1.6 131508 2qwwA 154 66.95 2a61A 145 67.26 a.4.5.28 126187 1wdcC 156 68.46 a.39.1.5 17317 1m7yA 435 68.87 c.67.1.4 78761 1hlvA 131 69.41 a.4.1.7,a.4.1.7 65854,65855 2di4A 238 70.05 a.269.1.1 131522 3csuA 310 71.61 c.78.1.1,c.78.1.1 35094,35095 1jyoA 130 71.77 d.198.1.1 67483 1n97A 389 72.97 a.104.1.1 80335 1qsaA 618 73.32 a.118.5.1,d.2.1.6 19182,36988 1efyA 350 73.49 a.41.1.1,d.166.1.2 17413,42275 2qcxA 263 74.28 1xnfA 275 75.09 a.118.8.1 115580 2h61A 92 75.71 a.39.1.2 136169 1n45A 233 75.74 a.132.1.1 79981 3bhpA 60 75.93 2bwnA 401 76.32 c.67.1.4 129368 1pjhA 280 76.48 c.14.1.3 94761 2i6uA 307 76.62 1musA 477 78.17 c.55.3.4 79494 3ceaA 346 78.29 1u5tA 233 78.49 a.4.5.54,a.4.5.54 107684,107685 2p2sA 336 81.02 2fdrA 229 81.74 c.108.1.6 133319 2f7bA 233 82.40 1h1yA 228 83.25 c.1.2.2 76506 2dxnA 274 84.73 1tltA 319 85.17 c.2.1.3,d.81.1.5 107135,107136 2hoxA 427 85.19 c.67.1.1 136644 3bkxA 275 86.33 1jtvA 327 87.17 c.2.1.2 84230 1jgsA 138 87.69 a.4.5.28 66683 1dpgA 485 88.02 c.2.1.3,d.81.1.5 30074,39989 1xeaA 323 88.17 c.2.1.3,d.81.1.5 109572,109573 1owlA 484 89.63 a.99.1.1,c.28.1.1 93647,93648 1c7nA 399 89.85 c.67.1.3 34413