# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 3.53e-74 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 1.39e-72 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 7.46e-70 d.185.1.1,d.185.1.1 104254,104255 1hr6A 475 9.05e-70 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 2.96e-66 1kb9A 431 4.54e-65 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 5.42e-65 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 2.68e-64 2fgeA 995 6.27e-62 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 1.44e-49 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 2.36e-38 2i7qA 402 0.4742 2dplA 308 1.623 1wyuA 438 3.264 c.67.1.7 121452 2ppqA 322 3.667 2okjA 504 3.768 2hszA 243 4.143 c.108.1.6 136726 3boqA 160 4.750 3broA 141 5.060 2grmA 317 5.086 2hi0A 240 5.677 1fchA 368 5.736 a.118.8.1 19212 1s95A 333 6.039 d.159.1.3 105375 2ho1A 252 7.152 2r44A 331 8.580 2p4fA 299 8.607 1kmqA 184 9.249 c.37.1.8 84412 1dqeA 137 9.601 a.39.2.1 17388 2fa5A 162 10.30 2hr3A 147 11.18 a.4.5.28 136678 2awiA 317 11.37 a.35.1.11,a.118.8.4 127435,127436 2i88A 191 11.42 3cjnA 162 11.78 1zejA 293 11.88 3bwdD 182 13.80 2fbhA 146 14.14 a.4.5.28 133245 1fxlA 167 15.00 d.58.7.1,d.58.7.1 39183,39184 3c5iA 369 15.22 2pujA 286 15.41 1xd7A 145 15.48 a.4.5.55 109566 3bpvA 138 16.48 2pkeA 251 16.68 1tujA 123 16.69 2rdpA 150 16.76 1wovA 250 16.88 a.132.1.1 121124 1pmmA 466 17.70 c.67.1.6 94901 2ethA 154 17.70 a.4.5.28 132358 2nnnA 140 17.97 1zemA 262 18.95 c.2.1.2 124984 1u5tA 233 19.28 a.4.5.54,a.4.5.54 107684,107685 2glxA 332 19.38 2dgkA 452 20.59 1xi9A 406 20.61 c.67.1.1 115355 1lj9A 144 21.37 a.4.5.28 78035 2ig7A 401 21.85 1d2fA 390 21.95 c.67.1.3 34411 2hp0A 466 22.10 1a0p 290 22.10 3caiA 406 22.61 1dceA 567 22.64 a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 1r5rA 119 22.72 a.39.2.1 97104 2gcoA 201 23.12 1lnwA 147 23.92 a.4.5.28 78104 1u69A 163 24.04 d.32.1.7 107699 2eu8A 216 24.37 1p3wA 404 24.83 c.67.1.3 87752 2fbiA 142 25.02 a.4.5.28 133246 2fbkA 181 25.33 a.4.5.28 133247 1k3eA 156 25.49 d.198.1.1 68103 1in4A 334 25.54 a.4.5.11,c.37.1.20 62597,62598 3bddA 142 25.75 1yviA 149 26.81 a.24.10.2 124099 1m7bA 184 26.96 c.37.1.8 74572 3bjhA 119 26.97 3b5oA 244 27.02 1yakA 263 27.13 a.132.1.3 122833 1fadA 99 28.08 a.77.1.2 18428 1m45A 148 28.70 a.39.1.5 78598 3c1vA 113 28.80 1xfrA 128 29.18 2uy1A 493 29.45 3bj6A 152 29.49 2gxgA 146 29.73 1txdA 385 29.95 a.87.1.1,b.55.1.1 107422,107423 1s3jA 155 30.04 a.4.5.28 98437 1hf2A 210 30.09 b.80.3.1,c.102.1.1 60992,60993 1ynpA 317 30.33 2fyfA 398 31.15 3bjaA 139 31.16 1g8iA 190 31.26 a.39.1.5 60363 4tmkA 213 31.40 c.37.1.1 31930 2r2iA 198 31.60 3csvA 333 32.22 2h61A 92 32.30 a.39.1.2 136169 2dtjA 178 33.17 2zfdA 226 33.30 1aisB 200 33.77 a.74.1.2,a.74.1.2 18384,18385 2rfgA 297 34.03 2bv6A 142 34.97 2h2kA 106 35.37 1omrA 201 35.70 a.39.1.5 93349 2qcxA 263 36.14 2nyxA 168 36.23 2hcfA 234 37.00 c.108.1.6 136333 1a0pA 290 38.86 a.60.9.1,d.163.1.1 18105,42165 2chgA 226 39.57 1h1yA 228 40.56 c.1.2.2 76506 1us0A 316 42.08 c.1.7.1 99850 2nuwA 288 44.47 1kqpA 271 44.69 c.26.2.1 72883 1jk7A 323 44.72 d.159.1.3 63144 1tyhA 248 45.48 a.132.1.3 107458 1wdcC 156 45.87 a.39.1.5 17317 1sg4A 260 46.75 c.14.1.3 118957 1rcwA 231 46.93 a.132.1.4 97299 1sigA 339 47.27 a.177.1.1 19068 2dgmA 466 47.51 c.67.1.6 131508 1gegA 256 47.82 c.2.1.2 29888 2fdrA 229 47.94 c.108.1.6 133319 2etxA 209 48.00 2qwwA 154 48.08 1jh6A 189 48.35 d.61.1.1 66707 2gmyA 153 48.74 a.152.1.3 135398 1pyfA 312 48.83 c.1.7.1 95334 1dpgA 485 50.23 c.2.1.3,d.81.1.5 30074,39989 2hoqA 241 50.50 1z67A 135 50.53 a.259.1.1 124507 1a2xA 159 52.92 a.39.1.5 17251 1nrlA 316 53.30 a.123.1.1 92091 2bbrA 195 53.80 1f07A 321 54.69 c.1.16.3 59560 1x1tA 260 54.76 c.2.1.2 121597 2graA 277 55.09 3bhpA 60 55.17 1uhnA 189 56.23 a.39.1.5 99399 1t3iA 420 56.35 c.67.1.3 106354 1rtwA 220 56.87 a.132.1.3 97823 2obhA 143 59.04 1ecrA 309 59.49 e.2.1.1 42678 3cdhA 155 59.91 1xnfA 275 59.92 a.118.8.1 115580 1qsaA 618 60.81 a.118.5.1,d.2.1.6 19182,36988 1xo0A 324 61.41 a.60.9.1,d.163.1.1 115674,115675 1mzgA 146 61.78 d.224.1.1 79696 1z91A 147 64.05 a.4.5.28 124736 1s1eA 224 65.18 a.39.1.5 112007 2gv5A 161 65.89 2ghpA 292 66.39 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2a61A 145 66.43 a.4.5.28 126187 2z0qA 346 67.30 2q4eA 362 67.84 2gnxA 365 68.12 1js3A 486 68.80 c.67.1.6 67215 2i06A 309 70.05 1j6wA 175 70.19 d.185.1.2 62663 1jtvA 327 70.93 c.2.1.2 84230 2v82A 212 72.14 2pnfA 248 72.46 2qacA 146 72.67 1c4kA 730 73.72 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 2pzzA 147 73.94 2e18A 257 74.64 1pjhA 280 75.35 c.14.1.3 94761 2czlA 272 76.15 c.94.1.1 131055 1mh1A 186 76.34 c.37.1.8 32002 2ho3A 325 76.61 2rjoA 332 76.76 1ggzA 148 76.90 a.39.1.5 70176 1l0bA 229 77.29 c.15.1.3,c.15.1.3 73391,73392 2p2sA 336 77.61 1zzkA 82 78.55 d.51.1.1 125909 2qfjA 216 78.98 1f5qB 252 80.08 a.74.1.1,a.74.1.1 18362,18363 1n45A 233 80.25 a.132.1.1 79981 2nogA 173 81.54 2yviA 111 81.99 3cfyA 137 82.31 2egdA 98 82.38 1a4pA 96 82.39 a.39.1.2 17176 2j0vA 212 82.51 1bykA 255 82.61 c.93.1.1 35706 1kk8B 139 83.20 a.39.1.5 77430 2q91A 101 83.60 1zrnA 232 84.65 c.108.1.1 43323 1w3iA 293 85.23 c.1.10.1 109152 2d1eA 248 85.26 1yqgA 263 87.32 1nf3A 195 87.73 c.37.1.8 85594 1xngA 268 88.52 c.26.2.1 122186 1colA 204 89.10 f.1.1.1 43378 1ek0A 170 89.56 c.37.1.8 32076 1ymkA 175 89.95 c.46.1.1 123699