# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 3.14e-85 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 1.53e-83 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 2.41e-80 d.185.1.1,d.185.1.1 104254,104255 1hr6A 475 3.70e-80 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 3.36e-76 1q2lA 939 2.93e-74 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 1kb9A 431 1.23e-73 d.185.1.1,d.185.1.1 77311,77312 2g47A 990 1.26e-73 2fgeA 995 9.71e-71 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 2.66e-57 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 9.08e-44 2i7qA 402 0.02741 2dplA 308 0.2460 2okjA 504 0.6395 1fchA 368 1.088 a.118.8.1 19212 2ho1A 252 1.101 3b5oA 244 2.083 1wyuA 438 2.497 c.67.1.7 121452 1s95A 333 2.844 d.159.1.3 105375 2ig7A 401 3.058 1rcwA 231 3.130 a.132.1.4 97299 2hp0A 466 3.442 1fxlA 167 3.756 d.58.7.1,d.58.7.1 39183,39184 1xi9A 406 3.962 c.67.1.1 115355 2hszA 243 4.084 c.108.1.6 136726 2ppqA 322 5.285 2pujA 286 6.401 2r44A 331 6.961 3broA 141 7.512 1h1yA 228 7.594 c.1.2.2 76506 1u69A 163 8.215 d.32.1.7 107699 1p3wA 404 9.447 c.67.1.3 87752 1pmmA 466 10.23 c.67.1.6 94901 1zejA 293 10.87 1tyhA 248 11.18 a.132.1.3 107458 2anrA 178 11.50 2qmaA 497 11.51 2qcxA 263 11.69 2etxA 209 12.88 2pkeA 251 13.54 2hi0A 240 13.58 2q4eA 362 14.66 1wovA 250 15.01 a.132.1.1 121124 2fyfA 398 15.11 2uy1A 493 15.96 3boqA 160 15.99 2p4fA 299 16.54 2dtjA 178 16.60 1rtwA 220 17.07 a.132.1.3 97823 2awiA 317 17.11 a.35.1.11,a.118.8.4 127435,127436 2hcfA 234 18.54 c.108.1.6 136333 1l0bA 229 18.92 c.15.1.3,c.15.1.3 73391,73392 2d2rA 245 19.36 2chgA 226 19.98 1hlvA 131 20.31 a.4.1.7,a.4.1.7 65854,65855 1ew6A 137 20.33 a.1.1.2 15637 2grmA 317 20.78 3bpvA 138 20.98 2ondA 308 22.11 2hufA 393 23.03 3caiA 406 23.27 1yakA 263 23.89 a.132.1.3 122833 1foeA 377 24.54 a.87.1.1,b.55.1.1 18517,26969 2rdpA 150 24.99 2dgmA 466 25.55 c.67.1.6 131508 2dgkA 452 25.83 2fbhA 146 25.88 a.4.5.28 133245 2bbrA 195 26.71 1xnfA 275 27.85 a.118.8.1 115580 2bwjA 199 28.95 2e2eA 177 29.21 2hr3A 147 29.59 a.4.5.28 136678 2glxA 332 30.20 1in4A 334 30.58 a.4.5.11,c.37.1.20 62597,62598 3bkxA 275 32.54 1jv1A 505 32.94 c.68.1.5 71892 1xngA 268 32.94 c.26.2.1 122186 4tmkA 213 33.00 c.37.1.1 31930 2fbkA 181 35.14 a.4.5.28 133247 1fadA 99 35.59 a.77.1.2 18428 1ky3A 182 37.20 c.37.1.8 73193 2hlsA 243 37.44 1ko6A 187 37.47 b.119.1.1 77471 2fbiA 142 37.89 a.4.5.28 133246 1nd4A 264 38.63 d.144.1.6 91815 2e18A 257 38.99 3bjaA 139 39.90 1wdcC 156 41.01 a.39.1.5 17317 1lnwA 147 41.33 a.4.5.28 78104 1dqeA 137 41.48 a.39.2.1 17388 1yjsA 419 41.52 c.67.1.4 123461 2rjoA 332 42.56 1a0p 290 43.45 2ovkC 159 43.95 2ethA 154 43.96 a.4.5.28 132358 1w3iA 293 45.36 c.1.10.1 109152 3bjhA 119 45.36 2jg0A 535 45.81 1auiB 169 46.46 a.39.1.5 17325 2ah5A 210 46.66 c.108.1.6 126742 1us0A 316 47.18 c.1.7.1 99850 1kmqA 184 47.34 c.37.1.8 84412 2czlA 272 47.55 c.94.1.1 131055 2i6uA 307 47.96 2p2sA 336 48.08 1s1eA 224 48.46 a.39.1.5 112007 3b9qA 302 48.58 2z9wA 392 48.95 1r5rA 119 49.41 a.39.2.1 97104 1z3xA 238 49.77 a.118.1.22,a.261.1.1 124416,124417 2fdrA 229 50.48 c.108.1.6 133319 1dpgA 485 50.72 c.2.1.3,d.81.1.5 30074,39989 2ho3A 325 52.36 2v82A 212 53.31 1uhnA 189 53.80 a.39.1.5 99399 1s3cA 141 54.90 2nyxA 168 55.01 1bykA 255 55.11 c.93.1.1 35706 1vjoA 393 55.49 c.67.1.3 100827 3c2bA 221 55.70 1iugA 352 56.85 c.67.1.3 90699 3ceaA 346 57.37 1m45A 148 58.09 a.39.1.5 78598 2ghpA 292 58.22 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1xfiA 367 58.48 e.50.1.1 109584 1ntyA 311 58.77 a.87.1.1,b.55.1.1 103873,103874 2z0qA 346 60.53 1t15A 214 61.61 c.15.1.3,c.15.1.3 99067,99068 1musA 477 61.71 c.55.3.4 79494 1td6A 306 62.32 a.234.1.1 112390 1d2fA 390 62.85 c.67.1.3 34411 2i88A 191 63.00 1j98A 157 63.30 d.185.1.2 62755 3c5iA 369 63.56 1txdA 385 64.01 a.87.1.1,b.55.1.1 107422,107423 1kl1A 419 64.14 c.67.1.4 72663 1aisB 200 66.68 a.74.1.2,a.74.1.2 18384,18385 3bwdD 182 67.13 1elwA 118 67.74 a.118.8.1 19207 1vp4A 425 68.02 c.67.1.1 113935 2nogA 173 68.03 2g6bA 180 68.10 c.37.1.8 134701 1js3A 486 68.74 c.67.1.6 67215 1t3iA 420 68.88 c.67.1.3 106354 2dtvA 397 69.23 3c1aA 315 72.02 3bj6A 152 73.21 2pyqA 114 74.46 1c7nA 399 75.22 c.67.1.3 34413 1u3dA 509 76.32 a.99.1.1,c.28.1.1 107638,107639 2j6gA 266 76.37 1yviA 149 76.69 a.24.10.2 124099 3bosA 242 76.81 2gxgA 146 77.82 2bv6A 142 78.53 1jk7A 323 78.75 d.159.1.3 63144 1qz9A 416 81.02 c.67.1.3 96621 1m7yA 435 81.38 c.67.1.4 78761 2h61A 92 81.63 a.39.1.2 136169 1zh8A 340 81.63 c.2.1.3,d.81.1.5 125077,125078 1zrnA 232 81.72 c.108.1.1 43323 1vjeA 166 81.99 d.185.1.2 100807 3bhpA 60 82.55 2gcoA 201 82.93 1jgsA 138 83.89 a.4.5.28 66683 1lj9A 144 84.49 a.4.5.28 78035 2a61A 145 84.61 a.4.5.28 126187 2qacA 146 85.73 1n45A 233 86.53 a.132.1.1 79981 2gnxA 365 86.62 2hoxA 427 87.21 c.67.1.1 136644 2nnnA 140 87.26 1ek0A 170 88.88 c.37.1.8 32076 1s4bP 674 88.91 d.92.1.5 105252 2nuwA 288 89.12