# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.04e-89 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 6.24e-88 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 1.33e-84 d.185.1.1,d.185.1.1 104254,104255 1hr6A 475 1.71e-84 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 2.72e-80 1q2lA 939 9.86e-78 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 1kb9A 431 1.07e-77 d.185.1.1,d.185.1.1 77311,77312 2g47A 990 3.49e-77 2fgeA 995 4.05e-74 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 3.86e-60 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 1.36e-45 2i7qA 402 0.02104 2dplA 308 0.2727 2okjA 504 0.3911 1fchA 368 1.182 a.118.8.1 19212 1wyuA 438 2.126 c.67.1.7 121452 2ho1A 252 2.675 3b5oA 244 3.016 2ig7A 401 3.064 2ppqA 322 3.350 1s95A 333 3.461 d.159.1.3 105375 1u69A 163 3.905 d.32.1.7 107699 1fxlA 167 4.000 d.58.7.1,d.58.7.1 39183,39184 2hp0A 466 4.492 2hszA 243 5.607 c.108.1.6 136726 1xi9A 406 5.640 c.67.1.1 115355 2r44A 331 6.388 2pujA 286 6.746 1rcwA 231 6.817 a.132.1.4 97299 2hi0A 240 6.847 2qmaA 497 6.867 1zejA 293 6.911 3broA 141 6.946 1p3wA 404 7.376 c.67.1.3 87752 2pkeA 251 9.413 1pmmA 466 9.485 c.67.1.6 94901 3boqA 160 11.54 2hcfA 234 12.08 c.108.1.6 136333 1h1yA 228 12.20 c.1.2.2 76506 2q4eA 362 12.53 1us0A 316 12.94 c.1.7.1 99850 2fyfA 398 13.05 1tyhA 248 13.81 a.132.1.3 107458 2etxA 209 13.96 2anrA 178 14.26 2awiA 317 14.45 a.35.1.11,a.118.8.4 127435,127436 2qcxA 263 14.98 1wovA 250 15.16 a.132.1.1 121124 3caiA 406 15.65 2dtjA 178 16.12 3bpvA 138 16.70 2p4fA 299 16.91 2uy1A 493 18.74 2chgA 226 18.78 1hlvA 131 19.12 a.4.1.7,a.4.1.7 65854,65855 1foeA 377 19.80 a.87.1.1,b.55.1.1 18517,26969 2rdpA 150 20.61 2hufA 393 21.24 1rtwA 220 22.23 a.132.1.3 97823 2grmA 317 22.25 2dgmA 466 22.30 c.67.1.6 131508 2dgkA 452 22.59 2hr3A 147 22.72 a.4.5.28 136678 1fadA 99 23.67 a.77.1.2 18428 2fbhA 146 25.76 a.4.5.28 133245 2d2rA 245 25.83 2ondA 308 26.15 2fbkA 181 26.37 a.4.5.28 133247 1yakA 263 26.67 a.132.1.3 122833 2v82A 212 28.28 1l0bA 229 28.53 c.15.1.3,c.15.1.3 73391,73392 4tmkA 213 28.63 c.37.1.1 31930 1ew6A 137 28.77 a.1.1.2 15637 1w3iA 293 29.19 c.1.10.1 109152 2glxA 332 29.45 1in4A 334 30.69 a.4.5.11,c.37.1.20 62597,62598 1ky3A 182 31.04 c.37.1.8 73193 2bbrA 195 31.05 1xngA 268 31.17 c.26.2.1 122186 1kmqA 184 32.64 c.37.1.8 84412 1nd4A 264 33.69 d.144.1.6 91815 3bkxA 275 33.73 2ho3A 325 34.06 1lnwA 147 35.17 a.4.5.28 78104 2hlsA 243 36.30 1yjsA 419 36.32 c.67.1.4 123461 2z9wA 392 38.29 1jv1A 505 38.32 c.68.1.5 71892 2ah5A 210 38.60 c.108.1.6 126742 2p2sA 336 39.35 3bjaA 139 39.56 1txdA 385 39.69 a.87.1.1,b.55.1.1 107422,107423 2fbiA 142 42.03 a.4.5.28 133246 2z0qA 346 42.20 2e2eA 177 42.59 2gnxA 365 42.64 1bykA 255 43.24 c.93.1.1 35706 2e18A 257 43.48 2bwjA 199 44.67 3ceaA 346 44.83 2ovkC 159 45.16 1wdcC 156 45.66 a.39.1.5 17317 2ethA 154 45.88 a.4.5.28 132358 1dpgA 485 46.34 c.2.1.3,d.81.1.5 30074,39989 1j98A 157 47.07 d.185.1.2 62755 2i6uA 307 48.01 1dqeA 137 48.21 a.39.2.1 17388 3c2bA 221 49.25 1xnfA 275 49.76 a.118.8.1 115580 3b9qA 302 50.58 1kl1A 419 51.69 c.67.1.4 72663 3bwdD 182 51.74 1s1eA 224 51.99 a.39.1.5 112007 2jg0A 535 52.45 1u3dA 509 53.39 a.99.1.1,c.28.1.1 107638,107639 2nyxA 168 54.33 1ek0A 170 55.16 c.37.1.8 32076 1auiB 169 55.30 a.39.1.5 17325 1a0p 290 55.53 1uhnA 189 55.89 a.39.1.5 99399 2d1eA 248 55.91 3bjhA 119 56.53 2g6bA 180 56.56 c.37.1.8 134701 1ko6A 187 57.13 b.119.1.1 77471 1ntyA 311 57.67 a.87.1.1,b.55.1.1 103873,103874 2rjoA 332 58.07 2nuwA 288 59.28 2gxgA 146 59.58 1d2fA 390 59.72 c.67.1.3 34411 1xfiA 367 59.89 e.50.1.1 109584 2fa5A 162 60.29 1iugA 352 61.09 c.67.1.3 90699 1jk7A 323 63.92 d.159.1.3 63144 1w5tA 412 64.35 a.4.5.11,c.37.1.20 114255,114256 2qacA 146 64.44 1zybA 232 64.59 a.4.5.4,b.82.3.2 125815,125816 1lj9A 144 64.97 a.4.5.28 78035 1r5rA 119 65.39 a.39.2.1 97104 1s3cA 141 66.41 3c1aA 315 67.05 1vjeA 166 67.42 d.185.1.2 100807 1aisB 200 68.39 a.74.1.2,a.74.1.2 18384,18385 1musA 477 69.31 c.55.3.4 79494 3bhwA 209 70.73 2gcoA 201 71.00 2a61A 145 71.32 a.4.5.28 126187 2fdrA 229 71.42 c.108.1.6 133319 2nogA 173 71.53 1vp4A 425 71.57 c.67.1.1 113935 1m45A 148 72.38 a.39.1.5 78598 1s3jA 155 73.10 a.4.5.28 98437 3bcxA 437 74.26 1n45A 233 74.28 a.132.1.1 79981 1z3xA 238 74.36 a.118.1.22,a.261.1.1 124416,124417 1t15A 214 74.64 c.15.1.3,c.15.1.3 99067,99068 1nw1A 429 74.85 d.144.1.8 86286 2ql3A 209 74.96 2ifuA 307 75.51 2g8yA 385 75.86 2eu8A 216 76.07 2czlA 272 76.28 c.94.1.1 131055 1vjoA 393 76.35 c.67.1.3 100827 1k3eA 156 76.75 d.198.1.1 68103 1u8zA 168 77.42 c.37.1.8 113212 1pbeA 394 78.31 c.3.1.2,d.16.1.2 30338,37869 2hoxA 427 78.54 c.67.1.1 136644 3c5iA 369 79.43 1zrnA 232 79.72 c.108.1.1 43323 1f07A 321 79.96 c.1.16.3 59560 2bv6A 142 81.82 3bj6A 152 81.84 2v6gA 364 82.74 2pyqA 114 83.63 2d4yA 463 83.74 2h61A 92 83.96 a.39.1.2 136169 1ppjD 241 84.13 a.3.1.3,f.23.11.1 104258,104259 2hmaA 376 84.36 1zh8A 340 84.47 c.2.1.3,d.81.1.5 125077,125078 2qa1A 500 85.34 2jabA 136 86.30 2dr1A 386 86.63 2j6gA 266 87.02 2r2iA 198 87.05 2hejA 323 88.35 3bhpA 60 88.83