# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 7.59e-85 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 3.23e-83 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 5.23e-80 d.185.1.1,d.185.1.1 104254,104255 1hr6A 475 8.60e-80 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 9.19e-76 1q2lA 939 8.20e-74 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 1kb9A 431 2.17e-73 d.185.1.1,d.185.1.1 77311,77312 2g47A 990 5.28e-73 2fgeA 995 2.07e-70 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 3.91e-57 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 2.94e-43 2i7qA 402 0.02461 2dplA 308 0.3057 2okjA 504 0.7082 1fchA 368 1.147 a.118.8.1 19212 3b5oA 244 1.238 2ig7A 401 2.368 2ho1A 252 2.618 1rcwA 231 2.907 a.132.1.4 97299 1s95A 333 3.531 d.159.1.3 105375 1fxlA 167 4.375 d.58.7.1,d.58.7.1 39183,39184 1wyuA 438 4.645 c.67.1.7 121452 1xi9A 406 4.665 c.67.1.1 115355 2ppqA 322 4.856 1u69A 163 5.457 d.32.1.7 107699 1zejA 293 5.705 1tyhA 248 5.934 a.132.1.3 107458 3broA 141 6.216 2hp0A 466 6.416 1p3wA 404 6.721 c.67.1.3 87752 2r44A 331 6.870 2qcxA 263 7.837 2pujA 286 7.866 2hszA 243 8.012 c.108.1.6 136726 3boqA 160 9.792 1wovA 250 10.53 a.132.1.1 121124 3bpvA 138 12.04 2uy1A 493 12.13 1h1yA 228 12.35 c.1.2.2 76506 2hi0A 240 12.57 1pmmA 466 12.72 c.67.1.6 94901 2qmaA 497 13.04 2hcfA 234 14.02 c.108.1.6 136333 2etxA 209 14.72 2fbhA 146 14.96 a.4.5.28 133245 3caiA 406 15.26 1yakA 263 15.31 a.132.1.3 122833 2pkeA 251 15.75 2rdpA 150 16.02 2dtjA 178 16.25 1rtwA 220 17.17 a.132.1.3 97823 2q4eA 362 17.39 1hlvA 131 17.78 a.4.1.7,a.4.1.7 65854,65855 2fyfA 398 18.12 2hr3A 147 18.68 a.4.5.28 136678 2hufA 393 20.75 2anrA 178 21.03 1lnwA 147 22.00 a.4.5.28 78104 1foeA 377 22.74 a.87.1.1,b.55.1.1 18517,26969 2awiA 317 23.41 a.35.1.11,a.118.8.4 127435,127436 1us0A 316 23.73 c.1.7.1 99850 2fbkA 181 24.10 a.4.5.28 133247 2p4fA 299 24.64 2d2rA 245 24.97 3bjaA 139 25.18 2chgA 226 25.27 1xngA 268 25.49 c.26.2.1 122186 2dgmA 466 25.74 c.67.1.6 131508 2dgkA 452 26.15 1ew6A 137 26.78 a.1.1.2 15637 1xnfA 275 26.81 a.118.8.1 115580 1in4A 334 26.98 a.4.5.11,c.37.1.20 62597,62598 2ondA 308 27.10 2bbrA 195 28.17 1fadA 99 28.29 a.77.1.2 18428 3bkxA 275 28.39 2e2eA 177 29.38 1yjsA 419 30.24 c.67.1.4 123461 3c2bA 221 31.80 1jv1A 505 32.53 c.68.1.5 71892 1a0p 290 33.63 2fbiA 142 35.66 a.4.5.28 133246 1l0bA 229 36.15 c.15.1.3,c.15.1.3 73391,73392 2g8yA 385 36.62 1nd4A 264 37.28 d.144.1.6 91815 2e18A 257 38.13 1ky3A 182 38.36 c.37.1.8 73193 2nyxA 168 38.63 1w3iA 293 39.20 c.1.10.1 109152 2ethA 154 40.61 a.4.5.28 132358 1wdcC 156 40.77 a.39.1.5 17317 2grmA 317 41.63 2glxA 332 41.89 2a61A 145 42.64 a.4.5.28 126187 1kmqA 184 42.75 c.37.1.8 84412 1s1eA 224 42.83 a.39.1.5 112007 1kl1A 419 45.35 c.67.1.4 72663 1dpgA 485 45.72 c.2.1.3,d.81.1.5 30074,39989 1uhnA 189 46.53 a.39.1.5 99399 1auiB 169 46.61 a.39.1.5 17325 2ovkC 159 46.98 2gxgA 146 47.30 2ho3A 325 47.93 2v82A 212 48.58 1s3jA 155 48.82 a.4.5.28 98437 2rjoA 332 49.22 2z9wA 392 51.44 2hlsA 243 51.47 2i6uA 307 51.48 2pftA 571 51.96 2fa5A 162 52.06 2p2sA 336 52.16 4tmkA 213 53.94 c.37.1.1 31930 3bj6A 152 54.73 2z0qA 346 55.88 1txdA 385 57.11 a.87.1.1,b.55.1.1 107422,107423 1jk7A 323 57.24 d.159.1.3 63144 3b9qA 302 57.61 1cshA 435 58.10 a.103.1.1 18880 2d1eA 248 58.52 1n45A 233 58.56 a.132.1.1 79981 1musA 477 59.27 c.55.3.4 79494 1yviA 149 59.80 a.24.10.2 124099 1u3dA 509 60.88 a.99.1.1,c.28.1.1 107638,107639 2qrwA 128 61.62 3ceaA 346 61.78 2czlA 272 62.04 c.94.1.1 131055 1lj9A 144 62.30 a.4.5.28 78035 3bruA 222 62.80 3c5iA 369 63.50 2bwjA 199 64.30 2nogA 173 66.37 2nuwA 288 66.46 1js3A 486 67.83 c.67.1.6 67215 2hoxA 427 67.84 c.67.1.1 136644 2jg0A 535 68.58 1d2fA 390 68.84 c.67.1.3 34411 1jgsA 138 69.04 a.4.5.28 66683 1dqeA 137 70.25 a.39.2.1 17388 3c4bA 265 70.47 2ifuA 307 70.89 1ek0A 170 71.17 c.37.1.8 32076 2d4yA 463 71.26 2es4D 332 71.56 2gnxA 365 72.40 1ppjD 241 72.67 a.3.1.3,f.23.11.1 104258,104259 1pbeA 394 73.28 c.3.1.2,d.16.1.2 30338,37869 1s3cA 141 75.66 2v6gA 364 77.96 1elwA 118 78.44 a.118.8.1 19207 3bwdD 182 78.49 1z3xA 238 79.77 a.118.1.22,a.261.1.1 124416,124417 1g8iA 190 80.03 a.39.1.5 60363 1xfiA 367 80.06 e.50.1.1 109584 1m45A 148 80.23 a.39.1.5 78598 3bjhA 119 80.52 1aisB 200 80.78 a.74.1.2,a.74.1.2 18384,18385 1r5rA 119 80.99 a.39.2.1 97104 1j98A 157 82.08 d.185.1.2 62755 2yzvA 303 82.10 2qm8A 337 83.22 1t3iA 420 83.78 c.67.1.3 106354 2hejA 323 83.92 2g6bA 180 84.21 c.37.1.8 134701 1c7nA 399 84.36 c.67.1.3 34413 1bykA 255 84.55 c.93.1.1 35706 2h61A 92 85.41 a.39.1.2 136169 2nnnA 140 86.34 2pyqA 114 86.38 2bv6A 142 86.49 1hw1A 239 86.73 a.4.5.6,a.78.1.1 16111,18441 3cfyA 137 87.09 3bhpA 60 88.00 1iuhA 198 88.26 d.61.1.2 83711 1iugA 352 88.47 c.67.1.3 90699 2jabA 136 89.44 1vjeA 166 89.73 d.185.1.2 100807 2ah5A 210 89.82 c.108.1.6 126742