# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 2.74e-69 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 1.10e-67 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 6.92e-65 d.185.1.1,d.185.1.1 104254,104255 1hr6A 475 7.54e-65 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 2.46e-61 1kb9A 431 3.30e-60 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 2.27e-58 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 7.74e-56 2fgeA 995 1.86e-51 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 4.78e-47 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 6.81e-37 2i7qA 402 1.039 2ig7A 401 2.569 1us0A 316 3.261 c.1.7.1 99850 1yakA 263 3.333 a.132.1.3 122833 1mi3A 322 3.407 c.1.7.1 91274 1qwkA 317 4.368 c.1.7.1 96482 2v82A 212 4.832 1tyhA 248 4.870 a.132.1.3 107458 4tmkA 213 5.008 c.37.1.1 31930 1xi9A 406 5.494 c.67.1.1 115355 1s4bP 674 5.880 d.92.1.5 105252 1rcwA 231 6.194 a.132.1.4 97299 1s1pA 331 6.506 c.1.7.1 98350 1rtwA 220 7.195 a.132.1.3 97823 1h1yA 228 7.683 c.1.2.2 76506 3b5oA 244 7.859 1n62C 288 8.060 d.87.2.1,d.145.1.3 80094,80095 1p3wA 404 8.308 c.67.1.3 87752 2hejA 323 9.124 1n45A 233 9.511 a.132.1.1 79981 2hszA 243 9.914 c.108.1.6 136726 2qcxA 263 10.53 2p4fA 299 11.34 3bwdD 182 11.47 2rhsA 294 11.89 2dtjA 178 12.01 1wovA 250 12.68 a.132.1.1 121124 1kmqA 184 12.99 c.37.1.8 84412 2es4D 332 13.86 1vjeA 166 15.69 d.185.1.2 100807 2g6bA 180 16.19 c.37.1.8 134701 3c5iA 369 17.00 3crrA 323 17.09 3buvA 326 17.12 2q4eA 362 17.88 2i06A 309 18.91 1l5aA 436 19.00 c.43.1.2,c.43.1.2 75923,75924 1i3cA 149 20.12 c.23.1.1 71112 1hw6A 278 21.45 c.1.7.1 61296 1j96A 323 21.66 c.1.7.1 71616 2etxA 209 21.73 1xvhA 129 22.35 a.8.1.2,a.8.1.2 116084,116085 2hcfA 234 23.98 c.108.1.6 136333 2lhbA 149 24.29 a.1.1.2 15597 1vbjA 281 24.70 3bhwA 209 24.86 2qm8A 337 24.89 1m7bA 184 25.67 c.37.1.8 74572 1js3A 486 25.77 c.67.1.6 67215 1wzdA 215 25.91 a.132.1.1 121493 1iw0A 215 26.20 a.132.1.1 83720 2nogA 173 26.38 1zybA 232 26.48 a.4.5.4,b.82.3.2 125815,125816 2q3hA 201 26.68 1f07A 321 27.16 c.1.16.3 59560 1wyuA 438 27.62 c.67.1.7 121452 2glxA 332 28.01 1mh1 186 28.02 2grmA 317 28.25 2f9lA 199 28.42 c.37.1.8 133166 2yviA 111 29.85 1u69A 163 30.17 d.32.1.7 107699 1qv1A 195 31.10 a.39.1.5 96347 1bea 127 31.27 1fadA 99 31.93 a.77.1.2 18428 1nf3A 195 34.20 c.37.1.8 85594 1ky3A 182 35.32 c.37.1.8 73193 2awiA 317 35.79 a.35.1.11,a.118.8.4 127435,127436 2r2iA 198 36.32 2ho3A 325 36.72 1xnfA 275 36.73 a.118.8.1 115580 1j6wA 175 37.92 d.185.1.2 62663 1dlyA 164 38.88 a.1.1.1 14983 1lucB 324 39.21 c.1.16.1 29548 1yioA 208 39.58 a.4.6.2,c.23.1.1 123326,123327 1dpgA 485 39.58 c.2.1.3,d.81.1.5 30074,39989 2i88A 191 39.89 1ek0A 170 40.36 c.37.1.8 32076 2bbrA 195 40.44 3cexA 172 40.45 1frb 315 40.46 2o36A 674 40.98 1d2fA 390 42.67 c.67.1.3 34411 1rd5A 262 42.79 c.1.2.4 111772 1u8zA 168 43.42 c.37.1.8 113212 1ny1A 240 45.50 c.6.2.3 86395 2ao0A 324 45.97 1zuaX 317 46.10 2ppqA 322 46.28 1yxaA 398 46.28 2j0vA 212 46.45 1jv1A 505 46.50 c.68.1.5 71892 3bosA 242 47.22 1xbyA 216 48.18 c.1.2.3 121846 2pl1A 121 49.08 1s95A 333 49.74 d.159.1.3 105375 1zgdA 312 49.80 1k66A 149 52.59 c.23.1.1 90941 3bhpA 60 52.60 2b3fA 400 52.63 2q6mA 212 54.00 1s3cA 141 54.32 2pzzA 147 54.88 3bjhA 119 55.67 3ck6A 252 57.06 2dr1A 386 58.15 2rfaA 232 58.28 1yviA 149 58.67 a.24.10.2 124099 1fxlA 167 59.18 d.58.7.1,d.58.7.1 39183,39184 2ghpA 292 60.53 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2bfwA 200 60.99 c.87.1.8 128456 1t15A 214 61.14 c.15.1.3,c.15.1.3 99067,99068 1pz1A 333 61.40 c.1.7.1 95390 3broA 141 61.80 2jayA 291 62.19 1mh1A 186 64.68 c.37.1.8 32002 2fa5A 162 64.93 1omrA 201 65.47 a.39.1.5 93349 2nn4A 72 66.03 1c7nA 399 67.49 c.67.1.3 34413 1ur3M 319 68.15 c.1.7.1 99806 1txdA 385 68.85 a.87.1.1,b.55.1.1 107422,107423 3boqA 160 69.70 3c5cA 187 69.80 3cnbA 143 69.99 2hufA 393 70.32 3bhcA 249 71.12 1ls1A 295 71.88 a.24.13.1,c.37.1.10 78170,78171 1q3eA 207 72.91 b.82.3.2 95669 1jflA 228 74.84 c.78.2.1,c.78.2.1 71656,71657 1a04A 215 75.45 a.4.6.2,c.23.1.1 16234,31089 1tqxA 227 76.41 c.1.2.2 112614 2pkeA 251 76.78 1hf2A 210 76.79 b.80.3.1,c.102.1.1 60992,60993 1v33A 366 77.05 d.264.1.1 100278 1zh2A 121 77.85 c.23.1.1 125069 2douA 376 78.00 1hw1A 239 78.09 a.4.5.6,a.78.1.1 16111,18441 2ol2A 395 78.24 1kl1A 419 78.63 c.67.1.4 72663 1q1oA 98 79.05 d.15.2.2 95596 2ho1A 252 79.80 2anrA 178 80.26 2hs5A 239 80.30 1zh8A 340 81.29 c.2.1.3,d.81.1.5 125077,125078 2fbkA 181 81.53 a.4.5.28 133247 1pyfA 312 82.01 c.1.7.1 95334 1c4kA 730 82.22 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1vp4A 425 82.37 c.67.1.1 113935 2pw4A 188 82.41 1lqaA 346 83.35 c.1.7.1 84674 1y791 680 84.71 2ce2X 166 85.29 1l0bA 229 86.26 c.15.1.3,c.15.1.3 73391,73392 1colA 204 87.71 f.1.1.1 43378 1m1nA 491 88.88 c.92.2.3 78417 2fn9A 290 88.99