# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.54e-79 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 2.58e-78 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 5.81e-75 d.185.1.1,d.185.1.1 104254,104255 1hr6A 475 6.60e-75 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 7.36e-72 1kb9A 431 2.02e-69 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 2.39e-69 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 6.27e-69 2fgeA 995 8.18e-66 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 1.23e-53 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 2.56e-41 2i7qA 402 0.04534 2dplA 308 0.4986 2okjA 504 0.5571 1fchA 368 1.807 a.118.8.1 19212 1wyuA 438 1.960 c.67.1.7 121452 1s95A 333 2.714 d.159.1.3 105375 2ig7A 401 3.106 1fxlA 167 3.706 d.58.7.1,d.58.7.1 39183,39184 1u69A 163 4.380 d.32.1.7 107699 1xi9A 406 5.346 c.67.1.1 115355 2r44A 331 5.392 1h1yA 228 5.501 c.1.2.2 76506 2qmaA 497 5.964 1zejA 293 6.019 3broA 141 6.183 2awiA 317 6.331 a.35.1.11,a.118.8.4 127435,127436 2grmA 317 7.111 2ppqA 322 9.943 2hcfA 234 9.95 c.108.1.6 136333 2chgA 226 10.18 4tmkA 213 10.54 c.37.1.1 31930 2q4eA 362 10.60 3c5iA 369 11.14 1pmmA 466 13.35 c.67.1.6 94901 1us0A 316 13.45 c.1.7.1 99850 2p4fA 299 15.02 2dgmA 466 16.81 c.67.1.6 131508 1dpgA 485 17.20 c.2.1.3,d.81.1.5 30074,39989 1p3wA 404 17.27 c.67.1.3 87752 1ntyA 311 17.53 a.87.1.1,b.55.1.1 103873,103874 2uy1A 493 17.62 1vjeA 166 17.91 d.185.1.2 100807 1j6wA 175 18.02 d.185.1.2 62663 2hszA 243 18.55 c.108.1.6 136726 2ho1A 252 19.54 1in4A 334 21.75 a.4.5.11,c.37.1.20 62597,62598 2hp0A 466 23.60 2fyfA 398 25.38 2dgkA 452 25.86 1foeA 377 25.89 a.87.1.1,b.55.1.1 18517,26969 2etxA 209 26.20 1w3iA 293 26.52 c.1.10.1 109152 1jk7A 323 26.87 d.159.1.3 63144 2anrA 178 27.15 1yjsA 419 27.65 c.67.1.4 123461 2hlsA 243 27.98 1xngA 268 28.35 c.26.2.1 122186 1j98A 157 29.64 d.185.1.2 62755 2glxA 332 29.76 1s1eA 224 30.30 a.39.1.5 112007 3caiA 406 30.33 3bhpA 60 31.61 1yviA 149 31.94 a.24.10.2 124099 2qcxA 263 32.52 2i06A 309 33.36 2hr3A 147 33.63 a.4.5.28 136678 2dtjA 178 34.04 2v82A 212 34.10 1tyhA 248 34.64 a.132.1.3 107458 1njgA 250 34.68 c.37.1.20 85785 1kl1A 419 35.16 c.67.1.4 72663 2bwnA 401 35.70 c.67.1.4 129368 1kmqA 184 35.71 c.37.1.8 84412 1txdA 385 36.03 a.87.1.1,b.55.1.1 107422,107423 2hi0A 240 36.27 1hlvA 131 37.47 a.4.1.7,a.4.1.7 65854,65855 2d2rA 245 39.47 2d1eA 248 39.49 1t3iA 420 39.52 c.67.1.3 106354 2p2sA 336 40.47 1jv1A 505 40.58 c.68.1.5 71892 2fbhA 146 40.60 a.4.5.28 133245 2hufA 393 41.69 1d2fA 390 41.82 c.67.1.3 34411 1l0bA 229 43.75 c.15.1.3,c.15.1.3 73391,73392 1rcwA 231 43.94 a.132.1.4 97299 1wovA 250 44.16 a.132.1.1 121124 1jrrA 382 44.54 e.1.1.1 63256 1xnfA 275 47.90 a.118.8.1 115580 3bosA 242 48.23 1aisB 200 48.24 a.74.1.2,a.74.1.2 18384,18385 3boqA 160 49.14 1k3eA 156 49.88 d.198.1.1 68103 1musA 477 50.24 c.55.3.4 79494 2e18A 257 50.30 3csuA 310 51.53 c.78.1.1,c.78.1.1 35094,35095 3b5oA 244 52.17 2fbkA 181 52.19 a.4.5.28 133247 2pkeA 251 52.34 1xfiA 367 52.74 e.50.1.1 109584 1ko6A 187 53.02 b.119.1.1 77471 1g8iA 190 53.79 a.39.1.5 60363 2ho3A 325 54.68 2ah5A 210 54.87 c.108.1.6 126742 1xd7A 145 55.49 a.4.5.55 109566 2rjoA 332 55.99 1s4bP 674 56.39 d.92.1.5 105252 1z67A 135 56.99 a.259.1.1 124507 1fadA 99 57.41 a.77.1.2 18428 2e7jA 371 58.36 1s3cA 141 58.87 1nd4A 264 59.94 d.144.1.6 91815 3c2bA 221 60.01 2q40A 367 60.14 e.50.1.1 139814 3bwdD 182 61.09 2rgiA 98 61.57 1ymkA 175 61.84 c.46.1.1 123699 2qacA 146 62.03 1ppjD 241 62.56 a.3.1.3,f.23.11.1 104258,104259 2qfjA 216 62.82 2z0qA 346 64.55 2gcoA 201 65.62 1bykA 255 66.53 c.93.1.1 35706 1nrjB 218 66.82 c.37.1.8 86125 1z3xA 238 67.40 a.118.1.22,a.261.1.1 124416,124417 1nw1A 429 67.59 d.144.1.8 86286 2h61A 92 68.19 a.39.1.2 136169 2nuwA 288 69.83 1ya0A 497 70.52 a.118.8.1 122785 1m45A 148 70.78 a.39.1.5 78598 3bpvA 138 71.88 2bv6A 142 72.51 1yakA 263 73.79 a.132.1.3 122833 2ghpA 292 74.54 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1hf2A 210 74.58 b.80.3.1,c.102.1.1 60992,60993 1ecrA 309 75.18 e.2.1.1 42678 2ipxA 233 75.47 3csvA 333 77.06 3bjaA 139 77.07 2hejA 323 77.50 2ffiA 288 78.92 c.1.9.15 133385 2di4A 238 79.39 a.269.1.1 131522 1lj9A 144 79.52 a.4.5.28 78035 2g8yA 385 79.88 2zfdA 226 80.37 1qz9A 416 82.04 c.67.1.3 96621 2fbiA 142 84.66 a.4.5.28 133246 8abpA 306 86.45 c.93.1.1 35647 2ethA 154 86.49 a.4.5.28 132358 3coxA 507 86.80 c.3.1.2,d.16.1.1 30332,37863 3bkxA 275 87.27 2fp1A 166 87.69 a.130.1.4 133891 2rfgA 297 88.58 1jyoA 130 89.54 d.198.1.1 67483