# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 6.14e-60 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 1.66e-58 d.185.1.1,d.185.1.1 104252,104253 1hr6A 475 1.65e-56 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 5.49e-56 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 1.47e-53 2g47A 990 2.44e-52 1q2lA 939 5.13e-52 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 1kb9A 431 4.04e-51 d.185.1.1,d.185.1.1 77311,77312 2fgeA 995 6.19e-49 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 1.54e-39 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 4.13e-31 2i7qA 402 0.4360 2glxA 332 1.385 2dplA 308 1.754 1xi9A 406 2.254 c.67.1.1 115355 2dgmA 466 2.683 c.67.1.6 131508 1musA 477 3.354 c.55.3.4 79494 2g8yA 385 3.949 2q4eA 362 4.076 1wyuA 438 4.738 c.67.1.7 121452 2ig7A 401 6.544 1us0A 316 6.914 c.1.7.1 99850 1ntyA 311 9.746 a.87.1.1,b.55.1.1 103873,103874 3csuA 310 10.28 c.78.1.1,c.78.1.1 35094,35095 1lqaA 346 10.33 c.1.7.1 84674 1zejA 293 10.83 1fxlA 167 11.06 d.58.7.1,d.58.7.1 39183,39184 2hcfA 234 11.09 c.108.1.6 136333 1fchA 368 12.10 a.118.8.1 19212 2bwnA 401 12.13 c.67.1.4 129368 2gakA 391 13.23 1ouvA 273 15.23 a.118.18.1 93570 2uy1A 493 16.49 2hoxA 427 17.41 c.67.1.1 136644 1w36C 1122 17.60 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2po3A 424 17.79 2dgkA 452 18.47 1rydA 387 18.64 c.2.1.3,d.81.1.5 118801,118802 2v82A 212 19.09 2ho3A 325 19.60 1q0qA 406 20.35 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2bvfA 459 21.19 3c5iA 369 21.44 1u69A 163 21.47 d.32.1.7 107699 2jfkA 433 23.37 2okjA 504 23.84 1khbA 625 25.46 c.91.1.1,c.109.1.1 68606,68607 1a0iA 348 25.81 b.40.4.6,d.142.2.1 25363,41577 2hejA 323 25.86 1l5aA 436 26.18 c.43.1.2,c.43.1.2 75923,75924 2qddA 378 26.29 1jv1A 505 27.39 c.68.1.5 71892 4tmkA 213 28.42 c.37.1.1 31930 1zk7A 467 30.09 1jbwA 428 30.74 c.59.1.2,c.72.2.2 62860,62861 1tqnA 486 31.24 a.104.1.1 107238 1hl9A 449 32.98 b.71.1.3,c.1.8.11 90650,90651 1h1yA 228 33.39 c.1.2.2 76506 1vp4A 425 34.56 c.67.1.1 113935 2grmA 317 36.90 2awiA 317 37.23 a.35.1.11,a.118.8.4 127435,127436 2r44A 331 37.35 2fyfA 398 39.73 2rjoA 332 39.90 3ceaA 346 39.97 3broA 141 40.61 1u3dA 509 42.30 a.99.1.1,c.28.1.1 107638,107639 1a8lA 226 42.86 c.47.1.2,c.47.1.2 32777,32778 3bn1A 373 43.94 2rhsA 294 44.12 2v7bA 529 44.84 1pyfA 312 44.87 c.1.7.1 95334 2hp0A 466 45.39 1z2iA 358 45.50 1pmmA 466 45.85 c.67.1.6 94901 2pp3A 398 45.90 1f07A 321 47.02 c.1.16.3 59560 2qneA 495 47.15 1tyhA 248 47.19 a.132.1.3 107458 2qmaA 497 47.46 2ppqA 322 48.53 8abp 306 50.29 2pftA 571 50.40 1v9nA 360 51.31 1vbiA 344 52.25 1lk9A 448 52.54 c.67.1.1 78057 2hlsA 243 53.02 1r6fA 310 54.33 e.46.1.1 97149 1frb 315 55.52 1w3iA 293 57.67 c.1.10.1 109152 2a5yB 549 57.68 3c3kA 285 58.74 1gg4A 452 59.18 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2heuA 401 60.21 1ufaA 520 60.52 a.8.3.3,c.6.2.4 99329,99330 1zmdA 474 61.04 1xfiA 367 61.12 e.50.1.1 109584 2j0fA 482 61.18 1y8qA 346 61.28 2chgA 226 62.35 3c2bA 221 63.28 2d3qA 442 65.25 d.58.4.14 131214 1jf9A 408 65.44 c.67.1.3 62931 2hi0A 240 65.62 1tdzA 272 65.65 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 2ipxA 233 66.17 2hszA 243 70.06 c.108.1.6 136726 8abpA 306 70.89 c.93.1.1 35647 1gqiA 708 71.82 c.1.8.10,d.92.2.2 76279,76280 3c1aA 315 71.90 1d2fA 390 74.20 c.67.1.3 34411 2ho1A 252 75.04 2nuwA 288 75.48 1nw1A 429 76.01 d.144.1.8 86286 1mx3A 347 76.28 c.2.1.4,c.23.12.1 79638,79639 3csvA 333 78.13 1wvfA 520 79.63 d.58.32.1,d.145.1.1 121337,121338 1jdw 423 83.87 1j6wA 175 84.72 d.185.1.2 62663 1j96A 323 85.88 c.1.7.1 71616 2z0qA 346 86.71 2ia1A 178 86.85 1y7bA 542 87.17 b.29.1.23,b.67.2.1 122687,122688 2q01A 497 87.25 1nd4A 264 87.69 d.144.1.6 91815 2o7cA 398 88.44 2c07A 285 89.74 c.2.1.2 129577 1ynpA 317 89.93