# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 2.63e-78 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 4.59e-77 d.185.1.1,d.185.1.1 104252,104253 1hr6A 475 6.70e-74 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 7.48e-74 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 7.43e-71 1kb9A 431 2.36e-68 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 3.46e-68 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 1.37e-67 2fgeA 995 1.83e-64 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 5.48e-53 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 1.29e-40 2i7qA 402 0.05085 2okjA 504 0.4901 2dplA 308 0.7677 1fchA 368 1.145 a.118.8.1 19212 2ig7A 401 2.161 1xi9A 406 2.386 c.67.1.1 115355 1wyuA 438 2.976 c.67.1.7 121452 1s95A 333 3.359 d.159.1.3 105375 1fxlA 167 4.346 d.58.7.1,d.58.7.1 39183,39184 2r44A 331 4.458 1u69A 163 4.489 d.32.1.7 107699 2uy1A 493 4.629 2hcfA 234 5.075 c.108.1.6 136333 3broA 141 5.947 2qmaA 497 6.571 1us0A 316 6.808 c.1.7.1 99850 2q4eA 362 7.211 1zejA 293 7.266 2grmA 317 8.535 1h1yA 228 9.030 c.1.2.2 76506 2awiA 317 9.97 a.35.1.11,a.118.8.4 127435,127436 3c5iA 369 11.10 4tmkA 213 13.08 c.37.1.1 31930 2ppqA 322 13.26 1tyhA 248 16.20 a.132.1.3 107458 1rcwA 231 16.28 a.132.1.4 97299 2chgA 226 17.05 2hszA 243 17.91 c.108.1.6 136726 1xngA 268 18.09 c.26.2.1 122186 2hi0A 240 18.14 1p3wA 404 19.94 c.67.1.3 87752 1foeA 377 20.65 a.87.1.1,b.55.1.1 18517,26969 1w3iA 293 21.54 c.1.10.1 109152 2fyfA 398 21.69 2ho1A 252 22.43 1jk7A 323 24.75 d.159.1.3 63144 2v82A 212 24.87 1vjeA 166 24.99 d.185.1.2 100807 2glxA 332 25.84 2d1eA 248 25.85 2qcxA 263 27.04 3csuA 310 27.42 c.78.1.1,c.78.1.1 35094,35095 1pmmA 466 27.50 c.67.1.6 94901 1kmqA 184 27.60 c.37.1.8 84412 2hp0A 466 27.86 2dgmA 466 27.86 c.67.1.6 131508 1j6wA 175 28.11 d.185.1.2 62663 2hufA 393 28.44 1in4A 334 29.09 a.4.5.11,c.37.1.20 62597,62598 1s1eA 224 29.40 a.39.1.5 112007 2hr3A 147 29.62 a.4.5.28 136678 1wovA 250 30.51 a.132.1.1 121124 3boqA 160 30.59 3b5oA 244 32.24 2anrA 178 33.38 2dgkA 452 33.71 2p4fA 299 34.28 1ntyA 311 35.03 a.87.1.1,b.55.1.1 103873,103874 1musA 477 35.46 c.55.3.4 79494 2etxA 209 36.30 3bhpA 60 36.36 2ipxA 233 37.36 1yjsA 419 38.03 c.67.1.4 123461 1txdA 385 38.04 a.87.1.1,b.55.1.1 107422,107423 1yviA 149 38.27 a.24.10.2 124099 1hlvA 131 38.29 a.4.1.7,a.4.1.7 65854,65855 1xd7A 145 38.36 a.4.5.55 109566 3caiA 406 39.86 2e7jA 371 40.03 2fbkA 181 41.99 a.4.5.28 133247 2dtjA 178 42.60 2fbhA 146 42.65 a.4.5.28 133245 3bwdD 182 44.06 2e18A 257 44.45 2p2sA 336 44.67 2bwnA 401 46.82 c.67.1.4 129368 3c2bA 221 46.97 1yakA 263 47.10 a.132.1.3 122833 1t3iA 420 47.41 c.67.1.3 106354 1dpgA 485 48.81 c.2.1.3,d.81.1.5 30074,39989 1k3eA 156 49.07 d.198.1.1 68103 2gcoA 201 49.41 2d2rA 245 49.45 1kl1A 419 49.81 c.67.1.4 72663 2ho3A 325 49.94 2i06A 309 51.75 1j98A 157 52.42 d.185.1.2 62755 1z3xA 238 54.09 a.118.1.22,a.261.1.1 124416,124417 2hlsA 243 56.35 1njgA 250 57.94 c.37.1.20 85785 1nw1A 429 58.41 d.144.1.8 86286 3bjaA 139 58.60 2bv6A 142 59.80 2gmsA 390 59.82 1l0bA 229 60.13 c.15.1.3,c.15.1.3 73391,73392 1xnfA 275 61.47 a.118.8.1 115580 1s4bP 674 62.22 d.92.1.5 105252 2g8yA 385 62.60 1ppjD 241 63.26 a.3.1.3,f.23.11.1 104258,104259 2qacA 146 63.51 2nuwA 288 63.68 1fadA 99 63.69 a.77.1.2 18428 3bjdA 332 63.91 1jrrA 382 66.79 e.1.1.1 63256 1ya0A 497 67.10 a.118.8.1 122785 2di4A 238 68.84 a.269.1.1 131522 1aisB 200 69.31 a.74.1.2,a.74.1.2 18384,18385 2rgiA 98 70.03 1n62C 288 70.17 d.87.2.1,d.145.1.3 80094,80095 1xfiA 367 70.38 e.50.1.1 109584 1jv1A 505 70.47 c.68.1.5 71892 1d2fA 390 70.61 c.67.1.3 34411 2zfdA 226 70.73 1ko6A 187 73.82 b.119.1.1 77471 1zzkA 82 74.16 d.51.1.1 125909 2hejA 323 74.27 2ethA 154 74.36 a.4.5.28 132358 2pkeA 251 74.91 1ky3A 182 76.18 c.37.1.8 73193 1qz9A 416 76.25 c.67.1.3 96621 1frb 315 76.50 2hmaA 376 76.97 2nogA 173 77.01 1rtwA 220 77.95 a.132.1.3 97823 2ah5A 210 78.25 c.108.1.6 126742 1t0fA 276 79.74 a.4.5.27,c.52.1.16 112195,112196 3csvA 333 80.08 8abpA 306 80.47 c.93.1.1 35647 1g8iA 190 80.58 a.39.1.5 60363 1nrjB 218 81.39 c.37.1.8 86125 1ynpA 317 81.76 2rjoA 332 82.56 1n45A 233 82.70 a.132.1.1 79981 1twyA 290 82.88 c.94.1.1 112767 1ji0A 240 83.06 c.37.1.12 71665 1s3cA 141 83.33 2g6bA 180 83.76 c.37.1.8 134701 2z9wA 392 83.82 2fdrA 229 84.15 c.108.1.6 133319 2j4dA 525 84.93 1z67A 135 85.37 a.259.1.1 124507 2iwrA 178 85.99 2h61A 92 86.01 a.39.1.2 136169 3bpvA 138 86.16 2bptA 861 87.22 a.118.1.1 128951 1hf2A 210 87.57 b.80.3.1,c.102.1.1 60992,60993 1m45A 148 87.92 a.39.1.5 78598 3bcxA 437 88.08 2fbiA 142 88.24 a.4.5.28 133246 2d4yA 463 88.59