# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 6.28e-74 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 5.64e-72 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 3.45e-70 d.185.1.1,d.185.1.1 104254,104255 1hr6A 475 6.03e-70 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 1.51e-66 1kb9A 431 3.22e-65 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 4.10e-65 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 4.92e-64 2fgeA 995 1.97e-62 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 8.14e-51 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 1.91e-38 2i7qA 402 0.1838 2okjA 504 0.4721 2ppqA 322 0.9614 2uy1A 493 2.088 1fchA 368 2.265 a.118.8.1 19212 2ig7A 401 2.379 1us0A 316 2.659 c.1.7.1 99850 2awiA 317 3.555 a.35.1.11,a.118.8.4 127435,127436 1wyuA 438 4.820 c.67.1.7 121452 1s95A 333 5.270 d.159.1.3 105375 1fxlA 167 6.369 d.58.7.1,d.58.7.1 39183,39184 2q4eA 362 6.650 3b5oA 244 7.558 2fyfA 398 7.798 1u69A 163 9.702 d.32.1.7 107699 2dplA 308 9.96 1h1yA 228 10.19 c.1.2.2 76506 2r44A 331 10.43 2ho1A 252 10.51 2d2rA 245 10.62 1tyhA 248 11.73 a.132.1.3 107458 1d2fA 390 11.87 c.67.1.3 34411 1musA 477 12.30 c.55.3.4 79494 1nw1A 429 12.37 d.144.1.8 86286 2hufA 393 12.91 1xi9A 406 13.30 c.67.1.1 115355 2p4fA 299 13.44 3c5iA 369 14.10 2hp0A 466 14.32 2hcfA 234 14.64 c.108.1.6 136333 1vjoA 393 15.98 c.67.1.3 100827 2pftA 571 16.69 1f07A 321 16.97 c.1.16.3 59560 2qmaA 497 21.15 1txdA 385 21.75 a.87.1.1,b.55.1.1 107422,107423 4tmkA 213 21.93 c.37.1.1 31930 2etxA 209 22.51 3broA 141 23.27 2iagA 482 26.11 1rcwA 231 26.28 a.132.1.4 97299 2czlA 272 26.62 c.94.1.1 131055 2glxA 332 26.94 2eu8A 216 27.33 2rhsA 294 28.03 1pmmA 466 28.07 c.67.1.6 94901 1p3wA 404 28.49 c.67.1.3 87752 3cghA 516 29.08 2dgmA 466 29.27 c.67.1.6 131508 1hlvA 131 32.05 a.4.1.7,a.4.1.7 65854,65855 1dpgA 485 33.07 c.2.1.3,d.81.1.5 30074,39989 2ipxA 233 35.39 1ko6A 187 35.40 b.119.1.1 77471 1z3xA 238 35.54 a.118.1.22,a.261.1.1 124416,124417 1qwkA 317 35.97 c.1.7.1 96482 3bkxA 275 36.32 2grmA 317 37.39 1foeA 377 38.24 a.87.1.1,b.55.1.1 18517,26969 1yjsA 419 39.92 c.67.1.4 123461 1s1pA 331 41.54 c.1.7.1 98350 2v82A 212 41.73 1m7yA 435 42.20 c.67.1.4 78761 1lk9A 448 45.21 c.67.1.1 78057 1frb 315 46.26 1kl1A 419 47.39 c.67.1.4 72663 3bzbA 281 47.41 1jk7A 323 48.51 d.159.1.3 63144 1k3eA 156 49.15 d.198.1.1 68103 1c4kA 730 50.01 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1ya0A 497 50.25 a.118.8.1 122785 2pkeA 251 51.18 2dgkA 452 52.94 1qz9A 416 53.38 c.67.1.3 96621 2anrA 178 53.93 1j96A 323 54.10 c.1.7.1 71616 3buvA 326 54.40 1mi3A 322 54.93 c.1.7.1 91274 1bykA 255 55.84 c.93.1.1 35706 1jtvA 327 57.40 c.2.1.2 84230 1wovA 250 58.51 a.132.1.1 121124 2hr3A 147 59.51 a.4.5.28 136678 1kxuA 333 60.05 a.74.1.1,a.74.1.1 18358,18359 1xnfA 275 62.10 a.118.8.1 115580 2b5dX 528 63.93 a.8.3.3,c.6.2.4 127886,127887 1ky3A 182 64.04 c.37.1.8 73193 1zemA 262 64.16 c.2.1.2 124984 2i06A 309 64.33 1dqeA 137 64.74 a.39.2.1 17388 2graA 277 65.01 1ppjD 241 65.46 a.3.1.3,f.23.11.1 104258,104259 1t3iA 420 65.73 c.67.1.3 106354 2ho3A 325 65.79 1fadA 99 66.74 a.77.1.2 18428 2bwnA 401 67.88 c.67.1.4 129368 3caiA 406 68.51 2nnnA 140 70.23 2yv9A 291 70.57 1ntyA 311 72.13 a.87.1.1,b.55.1.1 103873,103874 3boqA 160 74.93 1w3iA 293 75.17 c.1.10.1 109152 3bpvA 138 75.88 2ghpA 292 76.58 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1zgdA 312 76.77 1rtwA 220 76.82 a.132.1.3 97823 2qfjA 216 77.08 1in6A 334 77.24 a.4.5.11,c.37.1.20 62601,62602 2gmsA 390 77.41 3bcxA 437 77.47 2ak3A 226 77.69 c.37.1.1,g.41.2.1 31892,45193 1pv1A 299 79.67 c.69.1.34 111639 1lhpA 312 80.13 c.72.1.5 77960 1xfrA 128 80.23 2fr1A 486 80.90 c.2.1.2,c.2.1.2 133961,133962 1zinA 217 81.97 c.37.1.1,g.41.2.1 31915,45178 2ia1A 178 81.99 1ecrA 309 82.31 e.2.1.1 42678 1xd7A 145 82.35 a.4.5.55 109566 2hmaA 376 82.79 2qcxA 263 83.73 2i6uA 307 84.24 1l0bA 229 84.59 c.15.1.3,c.15.1.3 73391,73392 2cohA 202 84.68 a.4.5.4,b.82.3.2 130677,130678 2fbiA 142 84.73 a.4.5.28 133246 2a5yB 549 85.66 3csuA 310 86.16 c.78.1.1,c.78.1.1 35094,35095 2fbhA 146 86.20 a.4.5.28 133245 2bh9A 489 86.31 1ouvA 273 86.97 a.118.18.1 93570 1n62C 288 87.34 d.87.2.1,d.145.1.3 80094,80095 2bptA 861 89.02 a.118.1.1 128951 1nd4A 264 89.54 d.144.1.6 91815