# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 7.38e-77 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 5.25e-75 d.185.1.1,d.185.1.1 104252,104253 1hr6A 475 8.85e-73 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 2.46e-72 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 8.04e-69 1q2lA 939 7.95e-68 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 1kb9A 431 1.51e-67 d.185.1.1,d.185.1.1 77311,77312 2g47A 990 8.11e-67 2fgeA 995 1.04e-64 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 2.87e-52 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 4.25e-40 2i7qA 402 0.08697 2okjA 504 0.6114 2ppqA 322 1.054 2dplA 308 1.103 1fchA 368 1.749 a.118.8.1 19212 3b5oA 244 2.673 1s95A 333 3.152 d.159.1.3 105375 1tyhA 248 4.064 a.132.1.3 107458 1wyuA 438 4.085 c.67.1.7 121452 2ig7A 401 4.176 2awiA 317 4.680 a.35.1.11,a.118.8.4 127435,127436 2uy1A 493 5.899 1rcwA 231 8.160 a.132.1.4 97299 2r44A 331 8.441 2ho1A 252 8.524 3broA 141 8.530 3c5iA 369 10.49 2qmaA 497 11.65 1u69A 163 11.83 d.32.1.7 107699 2fyfA 398 12.10 1fxlA 167 13.02 d.58.7.1,d.58.7.1 39183,39184 1h1yA 228 14.64 c.1.2.2 76506 2hr3A 147 14.77 a.4.5.28 136678 2d2rA 245 15.46 2p4fA 299 16.69 2pkeA 251 17.12 1xi9A 406 17.84 c.67.1.1 115355 1yakA 263 18.83 a.132.1.3 122833 2hcfA 234 19.16 c.108.1.6 136333 1p3wA 404 19.19 c.67.1.3 87752 3caiA 406 19.31 2qcxA 263 19.74 2grmA 317 19.92 2hp0A 466 19.96 2hi0A 240 21.38 2etxA 209 21.42 2hszA 243 22.23 c.108.1.6 136726 1in4A 334 22.40 a.4.5.11,c.37.1.20 62597,62598 2fbhA 146 23.07 a.4.5.28 133245 1d2fA 390 23.56 c.67.1.3 34411 1wovA 250 25.09 a.132.1.1 121124 3bpvA 138 25.21 3cjnA 162 26.52 1xfrA 128 27.07 1rtwA 220 27.17 a.132.1.3 97823 3boqA 160 28.15 1dqeA 137 29.11 a.39.2.1 17388 2q4eA 362 29.19 1xd7A 145 29.38 a.4.5.55 109566 1nw1A 429 29.46 d.144.1.8 86286 2eu8A 216 29.86 2ethA 154 30.21 a.4.5.28 132358 2nnnA 140 30.66 1hlvA 131 30.71 a.4.1.7,a.4.1.7 65854,65855 2v82A 212 30.87 2rdpA 150 31.10 2fa5A 162 31.29 1nd4A 264 32.62 d.144.1.6 91815 4tmkA 213 32.91 c.37.1.1 31930 1kmqA 184 34.56 c.37.1.8 84412 2fbkA 181 35.22 a.4.5.28 133247 1n45A 233 36.91 a.132.1.1 79981 2fbiA 142 36.93 a.4.5.28 133246 3bjhA 119 37.20 1bykA 255 37.37 c.93.1.1 35706 2pujA 286 37.60 2anrA 178 38.06 1xnfA 275 38.25 a.118.8.1 115580 1fadA 99 39.44 a.77.1.2 18428 1ya0A 497 39.74 a.118.8.1 122785 1yjsA 419 40.88 c.67.1.4 123461 2gcoA 201 42.18 1jtvA 327 43.05 c.2.1.2 84230 1z3xA 238 43.56 a.118.1.22,a.261.1.1 124416,124417 2dgkA 452 43.58 1pmmA 466 44.24 c.67.1.6 94901 3bjaA 139 44.90 1lnwA 147 46.65 a.4.5.28 78104 1dceA 567 46.93 a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 1jk7A 323 46.99 d.159.1.3 63144 1t3iA 420 47.22 c.67.1.3 106354 1jrrA 382 47.31 e.1.1.1 63256 2hufA 393 48.04 1musA 477 48.25 c.55.3.4 79494 1r5rA 119 49.11 a.39.2.1 97104 1xngA 268 50.55 c.26.2.1 122186 1lj9A 144 50.85 a.4.5.28 78035 2pftA 571 51.01 2e18A 257 51.47 1l0bA 229 52.66 c.15.1.3,c.15.1.3 73391,73392 2bv6A 142 52.71 2graA 277 52.78 3bddA 142 52.79 1us0A 316 53.13 c.1.7.1 99850 3bj6A 152 53.62 1ky3A 182 54.61 c.37.1.8 73193 1zemA 262 55.01 c.2.1.2 124984 2gnxA 365 56.05 1kl1A 419 56.44 c.67.1.4 72663 2iagA 482 56.44 1vjoA 393 56.90 c.67.1.3 100827 1t15A 214 57.53 c.15.1.3,c.15.1.3 99067,99068 2glxA 332 57.62 1k3eA 156 58.68 d.198.1.1 68103 3cdhA 155 60.59 2chgA 226 61.08 1hf2A 210 61.93 b.80.3.1,c.102.1.1 60992,60993 2ghpA 292 63.45 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1twyA 290 63.70 c.94.1.1 112767 3bjdA 332 63.88 1m45A 148 64.29 a.39.1.5 78598 2dtjA 178 64.83 1txdA 385 67.12 a.87.1.1,b.55.1.1 107422,107423 2ia1A 178 67.14 2d4yA 463 67.60 3bhpA 60 68.12 1n97A 389 68.31 a.104.1.1 80335 1f07A 321 68.39 c.1.16.3 59560 2fdrA 229 68.85 c.108.1.6 133319 2i6uA 307 69.17 2h61A 92 69.39 a.39.1.2 136169 2qwwA 154 69.83 1c4kA 730 70.05 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 2dgmA 466 70.08 c.67.1.6 131508 1wz9A 375 70.20 3csuA 310 70.21 c.78.1.1,c.78.1.1 35094,35095 2bptA 861 70.27 a.118.1.1 128951 1jgsA 138 70.54 a.4.5.28 66683 2nyxA 168 72.77 1tujA 123 72.85 2iwrA 178 73.60 1ntyA 311 74.85 a.87.1.1,b.55.1.1 103873,103874 3csvA 333 75.62 1j98A 157 77.29 d.185.1.2 62755 1qsaA 618 78.00 a.118.5.1,d.2.1.6 19182,36988 1dpgA 485 78.23 c.2.1.3,d.81.1.5 30074,39989 2gxgA 146 78.67 3c1vA 113 80.41 1m7yA 435 81.20 c.67.1.4 78761 1uehA 253 81.87 c.101.1.1 99259 1c7nA 399 82.10 c.67.1.3 34413 2a5yB 549 82.50 1ymkA 175 82.98 c.46.1.1 123699 1s3cA 141 85.68 3cs3A 277 86.30 1jh6A 189 86.66 d.61.1.1 66707 3bwdD 182 86.83 2gmyA 153 87.69 a.152.1.3 135398 1vjeA 166 88.58 d.185.1.2 100807