# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 6.38e-81 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 2.94e-79 d.185.1.1,d.185.1.1 104252,104253 1hr6A 475 8.36e-77 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 1.97e-76 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 1.33e-72 1q2lA 939 1.22e-71 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 1kb9A 431 3.85e-71 d.185.1.1,d.185.1.1 77311,77312 2g47A 990 9.17e-71 2fgeA 995 7.63e-68 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 2.01e-55 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 3.78e-42 2i7qA 402 0.04073 2dplA 308 0.8137 2okjA 504 0.8816 2ppqA 322 1.116 3b5oA 244 2.361 1wyuA 438 2.429 c.67.1.7 121452 2r44A 331 2.805 1fchA 368 2.845 a.118.8.1 19212 1s95A 333 2.924 d.159.1.3 105375 2ig7A 401 3.227 2uy1A 493 4.671 1rcwA 231 7.638 a.132.1.4 97299 1u69A 163 7.707 d.32.1.7 107699 1tyhA 248 7.772 a.132.1.3 107458 1fxlA 167 7.901 d.58.7.1,d.58.7.1 39183,39184 3broA 141 9.383 2hcfA 234 9.438 c.108.1.6 136333 2ho1A 252 9.613 3c5iA 369 9.855 2fyfA 398 9.912 2awiA 317 10.07 a.35.1.11,a.118.8.4 127435,127436 1d2fA 390 10.39 c.67.1.3 34411 1wovA 250 11.38 a.132.1.1 121124 1p3wA 404 12.26 c.67.1.3 87752 1h1yA 228 12.58 c.1.2.2 76506 2qcxA 263 13.56 1xi9A 406 14.01 c.67.1.1 115355 2hp0A 466 15.21 2etxA 209 15.57 4tmkA 213 15.58 c.37.1.1 31930 2pkeA 251 15.82 2q4eA 362 16.52 2hi0A 240 16.69 2p4fA 299 17.45 2qmaA 497 18.08 2hszA 243 18.48 c.108.1.6 136726 2graA 277 19.65 2d2rA 245 19.86 1us0A 316 19.86 c.1.7.1 99850 1yakA 263 21.30 a.132.1.3 122833 2rjoA 332 22.20 1in4A 334 22.63 a.4.5.11,c.37.1.20 62597,62598 2fdrA 229 23.33 c.108.1.6 133319 2pujA 286 24.91 2fbhA 146 25.55 a.4.5.28 133245 3caiA 406 25.93 1kmqA 184 28.65 c.37.1.8 84412 2grmA 317 29.93 1bykA 255 30.11 c.93.1.1 35706 1nw1A 429 30.19 d.144.1.8 86286 3bpvA 138 30.54 1l0bA 229 30.62 c.15.1.3,c.15.1.3 73391,73392 1rtwA 220 32.94 a.132.1.3 97823 1musA 477 32.99 c.55.3.4 79494 2dgkA 452 33.36 1dceA 567 33.40 a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 2anrA 178 34.60 1k3eA 156 34.64 d.198.1.1 68103 2eu8A 216 35.35 2bptA 861 37.42 a.118.1.1 128951 3bzbA 281 37.81 1ya0A 497 37.93 a.118.8.1 122785 1zejA 293 38.41 1ymkA 175 40.40 c.46.1.1 123699 2glxA 332 41.15 1ecrA 309 41.15 e.2.1.1 42678 1pmmA 466 41.28 c.67.1.6 94901 1txdA 385 41.35 a.87.1.1,b.55.1.1 107422,107423 2hr3A 147 41.43 a.4.5.28 136678 1xnfA 275 41.60 a.118.8.1 115580 1dpgA 485 42.93 c.2.1.3,d.81.1.5 30074,39989 1hlvA 131 42.98 a.4.1.7,a.4.1.7 65854,65855 2dgmA 466 43.42 c.67.1.6 131508 2pftA 571 43.58 2fbiA 142 43.99 a.4.5.28 133246 1vjeA 166 44.56 d.185.1.2 100807 2rhsA 294 45.10 2chgA 226 45.27 3boqA 160 45.78 2czlA 272 46.43 c.94.1.1 131055 3c2bA 221 46.55 1vjoA 393 47.22 c.67.1.3 100827 1t3iA 420 48.11 c.67.1.3 106354 2dtjA 178 49.23 3bjhA 119 49.37 3cjnA 162 49.92 2nnnA 140 51.84 2hlsA 243 51.86 1c4kA 730 52.33 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1yjsA 419 52.37 c.67.1.4 123461 2v82A 212 53.27 2rdpA 150 53.82 1f07A 321 53.95 c.1.16.3 59560 2z0qA 346 54.41 1xd7A 145 54.59 a.4.5.55 109566 3bhpA 60 54.77 1nd4A 264 55.18 d.144.1.6 91815 3csuA 310 55.55 c.78.1.1,c.78.1.1 35094,35095 1jk7A 323 55.68 d.159.1.3 63144 1ky3A 182 55.84 c.37.1.8 73193 1xngA 268 55.91 c.26.2.1 122186 1zemA 262 56.84 c.2.1.2 124984 3csvA 333 57.12 1t15A 214 57.31 c.15.1.3,c.15.1.3 99067,99068 1dqeA 137 57.66 a.39.2.1 17388 1sigA 339 57.83 a.177.1.1 19068 1n45A 233 58.22 a.132.1.1 79981 2ethA 154 58.31 a.4.5.28 132358 1qz9A 416 58.54 c.67.1.3 96621 2e18A 257 58.98 3cs3A 277 59.19 1ntyA 311 59.70 a.87.1.1,b.55.1.1 103873,103874 2hmaA 376 59.90 1r5rA 119 62.40 a.39.2.1 97104 1j98A 157 63.67 d.185.1.2 62755 1n97A 389 63.72 a.104.1.1 80335 3bjaA 139 64.22 3bwdD 182 65.17 1njgA 250 65.84 c.37.1.20 85785 1foeA 377 66.54 a.87.1.1,b.55.1.1 18517,26969 3bddA 142 66.92 1lnwA 147 67.61 a.4.5.28 78104 1jtvA 327 69.52 c.2.1.2 84230 2ghpA 292 70.47 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2hufA 393 71.50 2gcoA 201 71.54 2h61A 92 74.42 a.39.1.2 136169 2nyxA 168 75.72 2gxgA 146 76.06 2fa5A 162 76.07 2d1eA 248 77.08 1z3xA 238 77.14 a.118.1.22,a.261.1.1 124416,124417 1u5tA 233 77.86 a.4.5.54,a.4.5.54 107684,107685 1uehA 253 79.39 c.101.1.1 99259 2i6uA 307 79.81 1kl1A 419 80.15 c.67.1.4 72663 1xfrA 128 80.17 2ak3A 226 80.43 c.37.1.1,g.41.2.1 31892,45193 2di4A 238 80.84 a.269.1.1 131522 1wz9A 375 82.29 2d4yA 463 82.33 3bcxA 437 82.60 1tujA 123 83.77 1fadA 99 84.34 a.77.1.2 18428 3bj6A 152 85.02 2fbkA 181 85.65 a.4.5.28 133247 1xfiA 367 86.56 e.50.1.1 109584 1qsaA 618 88.89 a.118.5.1,d.2.1.6 19182,36988 1oaaA 259 89.31 c.2.1.2 29829 2bv6A 142 89.47 2q40A 367 89.61 e.50.1.1 139814