# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.46e-71 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 2.13e-70 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 4.26e-68 d.185.1.1,d.185.1.1 104254,104255 1hr6A 475 2.43e-67 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 4.35e-65 1kb9A 431 6.83e-64 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 2.09e-60 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 5.68e-56 1kb9B 352 9.57e-51 d.185.1.1,d.185.1.1 77313,77314 2fgeA 995 1.03e-49 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 3cx5B 352 7.90e-39 1h1yA 228 0.2711 c.1.2.2 76506 1yakA 263 1.371 a.132.1.3 122833 2i06A 309 1.459 1dpgA 485 2.245 c.2.1.3,d.81.1.5 30074,39989 1rtwA 220 2.464 a.132.1.3 97823 1tyhA 248 2.756 a.132.1.3 107458 1rcwA 231 3.015 a.132.1.4 97299 2qcxA 263 5.306 1sigA 339 6.527 a.177.1.1 19068 1wyuA 438 8.029 c.67.1.7 121452 2q4eA 362 8.221 3bhwA 209 8.327 1qwkA 317 8.849 c.1.7.1 96482 2okjA 504 9.126 2ig7A 401 11.36 1kmqA 184 11.57 c.37.1.8 84412 2ho1A 252 11.67 2i7qA 402 13.21 1t3iA 420 14.20 c.67.1.3 106354 1c4kA 730 16.01 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 2glxA 332 16.41 1u69A 163 16.77 d.32.1.7 107699 4tmkA 213 17.02 c.37.1.1 31930 2yw3A 207 17.55 2fyfA 398 17.73 2i79A 172 17.91 1tqxA 227 19.07 c.1.2.2 112614 1s1pA 331 21.63 c.1.7.1 98350 1uxjA 309 21.77 c.2.1.5,d.162.1.1 108112,108113 2pvaA 345 22.04 d.153.1.3 41850 1xi9A 406 22.52 c.67.1.1 115355 2e7jA 371 22.53 1bea 127 22.61 1us0A 316 22.73 c.1.7.1 99850 2ho3A 325 24.98 2bfwA 200 25.12 c.87.1.8 128456 1hh8A 213 26.32 a.118.8.1 61042 3bwdD 182 27.04 1pzgA 331 28.53 c.2.1.5,d.162.1.1 95425,95426 1xnfA 275 29.08 a.118.8.1 115580 2v82A 212 29.12 1vjoA 393 29.39 c.67.1.3 100827 2bh9A 489 29.84 1z72A 225 30.03 a.132.1.3 124583 1vjeA 166 30.45 d.185.1.2 100807 1tltA 319 30.87 c.2.1.3,d.81.1.5 107135,107136 2graA 277 32.07 1qz9A 416 32.60 c.67.1.3 96621 1dbhA 354 34.68 a.87.1.1,b.55.1.1 18514,26967 1s4bP 674 34.81 d.92.1.5 105252 2pnkA 428 35.05 2ccqA 99 35.96 d.314.1.1 130252 2hejA 323 36.02 2ahrA 259 36.28 a.100.1.10,c.2.1.6 126775,126776 1m7bA 184 36.81 c.37.1.8 74572 1fadA 99 36.84 a.77.1.2 18428 1xfrA 128 38.10 1m12A 84 40.41 a.64.1.1 84745 1ecrA 309 40.71 e.2.1.1 42678 1y8qA 346 41.54 2pbnA 313 42.63 2r7gA 347 43.14 2z9wA 392 44.88 2yysA 286 45.03 1g8iA 190 45.24 a.39.1.5 60363 1zh8A 340 45.90 c.2.1.3,d.81.1.5 125077,125078 2douA 376 46.05 2uxyA 341 47.49 3b9fI 395 47.57 1hyhA 309 47.73 c.2.1.5,d.162.1.1 30150,42117 1mi3A 322 48.03 c.1.7.1 91274 2p2sA 336 48.45 1p3wA 404 48.49 c.67.1.3 87752 1a8y 367 49.55 2og1A 286 49.58 2z20A 432 49.89 1pz1A 333 49.95 c.1.7.1 95390 2o20A 332 51.38 2qeeA 437 51.60 1u4qA 322 51.79 a.7.1.1,a.7.1.1,a.7.1.1 113024,113025,113026 1nd4A 264 51.84 d.144.1.6 91815 2dtjA 178 52.69 1d2fA 390 52.69 c.67.1.3 34411 2hufA 393 53.14 1xi3A 215 53.81 c.1.3.1 109601 1plqA 258 54.03 d.131.1.2,d.131.1.2 41388,41389 1j6wA 175 54.96 d.185.1.2 62663 1auiB 169 55.47 a.39.1.5 17325 2gptA 523 55.57 1jf9A 408 55.67 c.67.1.3 62931 1f07A 321 55.89 c.1.16.3 59560 3ck6A 252 56.17 1ntyA 311 56.38 a.87.1.1,b.55.1.1 103873,103874 3c1aA 315 56.50 1ynpA 317 57.53 3ceaA 346 58.30 2dtvA 397 59.19 2pkeA 251 59.20 1odfA 290 59.50 c.37.1.6 92782 1yozA 116 59.96 a.253.1.1 123796 2z15A 130 60.64 1yioA 208 62.04 a.4.6.2,c.23.1.1 123326,123327 1vp4A 425 63.11 c.67.1.1 113935 3bosA 242 63.20 1nqkA 381 63.67 c.1.16.4 92050 1v33A 366 64.47 d.264.1.1 100278 1hw6A 278 66.20 c.1.7.1 61296 2dr1A 386 66.83 2hlsA 243 67.73 2bkwA 385 67.83 c.67.1.3 128714 1aj8A 371 67.92 a.103.1.1 18900 2ghpA 292 69.00 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1zd9A 188 69.11 c.37.1.8 124938 2yviA 111 71.51 1dqeA 137 71.54 a.39.2.1 17388 2czdA 208 71.87 c.1.2.3 131045 3caiA 406 72.09 2jg0A 535 72.71 1xbyA 216 73.16 c.1.2.3 121846 1i3cA 149 73.36 c.23.1.1 71112 2nz8B 313 73.98 a.87.1.1,b.55.1.1 138838,138839 2ondA 308 74.36 1ky3A 182 74.94 c.37.1.8 73193 1uhgA 385 75.58 e.1.1.1 88491 1lucB 324 75.98 c.1.16.1 29548 2vdxA 373 79.32 1a04A 215 85.36 a.4.6.2,c.23.1.1 16234,31089 1txdA 385 85.52 a.87.1.1,b.55.1.1 107422,107423 1vkpA 383 87.98 d.126.1.6 108686 1rhcA 330 88.02 c.1.16.3 97468 1hw1A 239 89.89 a.4.5.6,a.78.1.1 16111,18441 3c18A 290 89.90