# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 8.19e-66 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 6.86e-64 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 2.40e-62 d.185.1.1,d.185.1.1 104254,104255 1hr6A 475 1.23e-61 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 2.56e-59 1kb9A 431 5.20e-58 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 1.36e-56 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 5.59e-54 2fgeA 995 4.78e-51 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 9.21e-46 d.185.1.1,d.185.1.1 77313,77314 3cx5B 352 1.67e-35 1h1yA 228 0.1001 c.1.2.2 76506 2okjA 504 0.6414 1wyuA 438 0.9090 c.67.1.7 121452 2i7qA 402 2.401 2p4fA 299 2.525 1vjoA 393 2.886 c.67.1.3 100827 1xi9A 406 3.888 c.67.1.1 115355 2hszA 243 5.404 c.108.1.6 136726 2dr1A 386 6.698 2hufA 393 7.130 2z20A 432 7.905 1tqxA 227 8.267 c.1.2.2 112614 1p3wA 404 8.652 c.67.1.3 87752 1t3iA 420 10.00 c.67.1.3 106354 1us0A 316 10.58 c.1.7.1 99850 1u69A 163 11.99 d.32.1.7 107699 2bkwA 385 12.14 c.67.1.3 128714 1fxlA 167 13.13 d.58.7.1,d.58.7.1 39183,39184 2e7jA 371 13.55 2glxA 332 13.99 2douA 376 14.33 1kl1A 419 14.37 c.67.1.4 72663 2ho1A 252 14.43 1fg7A 356 15.87 c.67.1.1 59819 2fyfA 398 16.05 1xnfA 275 16.10 a.118.8.1 115580 1fadA 99 16.32 a.77.1.2 18428 2awiA 317 16.53 a.35.1.11,a.118.8.4 127435,127436 2gauA 232 17.14 a.4.5.4,b.82.3.2 134894,134895 3b9pA 297 17.82 2hcfA 234 18.60 c.108.1.6 136333 1xi3A 215 19.47 c.1.3.1 109601 1ynuA 473 19.85 c.67.1.4 123762 1frb 315 20.01 1pzgA 331 20.37 c.2.1.5,d.162.1.1 95425,95426 1j96A 323 21.08 c.1.7.1 71616 1xbyA 216 21.41 c.1.2.3 121846 2pnkA 428 21.84 1wyuB 474 21.85 c.67.1.7 121453 2yrrA 353 22.31 1qwkA 317 22.57 c.1.7.1 96482 2dtjA 178 22.61 2ghpA 292 23.17 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1yjsA 419 23.68 c.67.1.4 123461 1m7yA 435 24.00 c.67.1.4 78761 2es4D 332 24.29 2pujA 286 24.39 1yakA 263 28.49 a.132.1.3 122833 3bosA 242 28.96 2vg0A 227 29.47 1qopA 268 30.56 c.1.2.4 28570 2q4eA 362 31.33 1kmqA 184 33.04 c.37.1.8 84412 3bhwA 209 33.55 2dtvA 397 33.77 1w3iA 293 36.69 c.1.10.1 109152 1brwA 433 37.45 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1jf9A 408 37.99 c.67.1.3 62931 3c6qA 311 38.05 2i88A 191 39.43 1rtwA 220 39.59 a.132.1.3 97823 1vp4A 425 39.78 c.67.1.1 113935 3c1aA 315 40.50 1uxjA 309 41.55 c.2.1.5,d.162.1.1 108112,108113 1gdeA 389 41.67 c.67.1.1 60456 1lc5A 364 42.48 c.67.1.1 73827 3bwdD 182 43.30 1uteA 313 43.56 d.159.1.1 42078 1xeaA 323 43.87 c.2.1.3,d.81.1.5 109572,109573 2dgkA 452 44.64 2yviA 111 45.60 1zybA 232 45.70 a.4.5.4,b.82.3.2 125815,125816 2graA 277 45.89 1a8y 367 46.10 1twyA 290 46.60 c.94.1.1 112767 2ho3A 325 47.08 3caxA 369 47.97 2bfwA 200 48.37 c.87.1.8 128456 3buvA 326 48.68 1ntyA 311 50.00 a.87.1.1,b.55.1.1 103873,103874 1fc4A 401 50.03 c.67.1.4 59760 2dztA 248 51.98 1kdoA 227 52.04 c.37.1.1 68478 1a0iA 348 52.48 b.40.4.6,d.142.2.1 25363,41577 1kidA 203 52.71 c.8.5.1 30771 1tltA 319 53.11 c.2.1.3,d.81.1.5 107135,107136 1ky3A 182 53.21 c.37.1.8 73193 1iugA 352 53.86 c.67.1.3 90699 1dpgA 485 54.01 c.2.1.3,d.81.1.5 30074,39989 1zgdA 312 54.61 1jk7A 323 55.59 d.159.1.3 63144 1rd5A 262 56.11 c.1.2.4 111772 1d2fA 390 56.44 c.67.1.3 34411 1pmmA 466 57.86 c.67.1.6 94901 2z5kA 890 58.00 2nuwA 288 58.01 2jisA 515 58.51 2grmA 317 60.11 3caiA 406 61.05 1mi3A 322 61.37 c.1.7.1 91274 2i6eA 301 62.70 2grjA 192 62.76 1kid 203 62.95 1nrjB 218 62.97 c.37.1.8 86125 2ccqA 99 63.16 d.314.1.1 130252 3b5oA 244 63.27 1gtvA 214 63.43 c.37.1.1 70537 1c4kA 730 63.55 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1fiqB 350 63.64 d.87.2.1,d.145.1.3 40229,41760 2fliA 220 63.73 c.1.2.2 133714 1d5tA 433 64.25 c.3.1.3,d.16.1.6 30422,37986 2ondA 308 64.84 1yozA 116 65.26 a.253.1.1 123796 1azwA 313 65.72 c.69.1.7 34658 2g2cA 167 65.84 c.57.1.1 134535 2gb3A 409 66.65 c.67.1.1 134903 1l5aA 436 66.94 c.43.1.2,c.43.1.2 75923,75924 2lhbA 149 67.83 a.1.1.2 15597 3c5iA 369 68.55 1s1pA 331 69.18 c.1.7.1 98350 2fcrA 173 70.25 c.23.5.1 31151 1rcwA 231 70.96 a.132.1.4 97299 1c7nA 399 71.01 c.67.1.3 34413 1js3A 486 72.44 c.67.1.6 67215 2ao0A 324 72.99 2hdyA 440 73.10 1hynP 379 73.45 d.112.1.2 61408 2dgmA 466 74.51 c.67.1.6 131508 2hlsA 243 76.01 1kmkA 406 76.12 c.67.1.3 68696 1p6xA 334 76.17 c.37.1.1 94195 2b3fA 400 76.91 2q6mA 212 77.11 2i09A 403 77.27 c.76.1.5,d.327.1.1 136946,136947 1of1A 376 77.32 c.37.1.1 103924 1oj7A 408 78.17 e.22.1.2 103971 1u5pA 216 78.27 a.7.1.1,a.7.1.1 113046,113047 2pkeA 251 78.73 1qz9A 416 79.68 c.67.1.3 96621 2qfjA 216 80.48 1zzkA 82 81.40 d.51.1.1 125909 1wstA 417 82.49 c.67.1.1 121244 2ig7A 401 82.56 1txdA 385 83.48 a.87.1.1,b.55.1.1 107422,107423 1a5zA 319 83.94 c.2.1.5,d.162.1.1 30181,42148 1lldA 319 84.29 c.2.1.5,d.162.1.1 30177,42144 1s95A 333 84.71 d.159.1.3 105375 4tmkA 213 84.82 c.37.1.1 31930 2q0oA 236 86.19 1rydA 387 86.47 c.2.1.3,d.81.1.5 118801,118802 1odfA 290 86.76 c.37.1.6 92782 2hi0A 240 88.02 1tyhA 248 88.26 a.132.1.3 107458 2viaA 405 88.45