# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 3.00e-34 d.185.1.1,d.185.1.1 61166,61167 1ppjB 439 1.33e-33 d.185.1.1,d.185.1.1 104254,104255 1ppjA 446 4.99e-33 d.185.1.1,d.185.1.1 104252,104253 1hr6A 475 8.90e-32 d.185.1.1,d.185.1.1 61164,61165 3cx5A 431 4.64e-29 1kb9A 431 2.09e-28 d.185.1.1,d.185.1.1 77311,77312 1q2lA 939 1.77e-25 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 5.74e-25 1kb9B 352 4.30e-20 d.185.1.1,d.185.1.1 77313,77314 2fgeA 995 1.20e-19 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 3cx5B 352 2.66e-17 2dy1A 665 3.100 1qsaA 618 4.082 a.118.5.1,d.2.1.6 19182,36988 2p4fA 299 4.478 1hynP 379 6.103 d.112.1.2 61408 2cxnA 557 6.396 2z0mA 337 8.570 2q4wA 524 10.19 1ur3M 319 10.39 c.1.7.1 99806 2bm0A 691 11.60 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 3c5iA 369 12.07 1dceB 331 12.16 a.102.4.3 18872 1a53A 247 13.09 c.1.2.4 28564 2d1cA 496 13.90 1v5xA 203 14.43 c.1.2.4 100377 2es4D 332 14.46 2ppqA 322 14.52 2c8mA 262 14.57 1oyzA 280 15.72 a.118.1.16 93775 1qzzA 374 17.28 a.4.5.29,c.66.1.12 96719,96720 1w1oA 534 18.66 d.58.32.4,d.145.1.1 109071,109072 1mzhA 225 18.74 c.1.10.1 79698 1ouvA 273 20.28 a.118.18.1 93570 2ie4A 589 21.73 a.118.1.2 137291 1a53 247 22.32 1g8mA 593 22.85 c.24.1.3,c.97.1.4 60371,60372 1piiA 452 22.91 c.1.2.4,c.1.2.4 28559,28563 1tw3A 360 23.24 a.4.5.29,c.66.1.12 107373,107374 2bg5A 324 24.47 3b5vA 248 26.00 1xkyA 301 26.97 c.1.10.1 122094 1y8cA 246 27.52 c.66.1.43 116563 1u0fA 564 28.62 c.80.1.2 112912 1zejA 293 29.50 2p0lA 288 30.23 1muwA 386 30.30 c.1.15.3 79495 1g99A 408 30.36 c.55.1.2,c.55.1.2 33457,33458 1korA 400 30.38 c.26.2.1,d.210.1.1 72824,72825 3c24A 286 30.81 1yfsA 465 31.27 a.203.1.1,d.104.1.1 123088,123089 1pii 452 31.51 2jhnA 295 32.73 2ig7A 401 34.43 2ihiA 395 35.47 2v7bA 529 35.69 2jgqA 233 36.88 1wddA 477 39.63 c.1.14.1,d.58.9.1 114528,114529 1ynpA 317 40.15 2gekA 406 41.20 2ffiA 288 41.61 c.1.9.15 133385 1pyfA 312 41.87 c.1.7.1 95334 1vcvA 226 42.24 c.1.10.1 119988 2exrA 524 43.09 1t06A 235 43.57 a.118.1.17 106194 2qacA 146 44.51 2olpA 152 44.52 2bvfA 459 45.47 1twfK 120 46.94 d.74.3.2 112736 2c1mA 424 47.46 2gauA 232 49.20 a.4.5.4,b.82.3.2 134894,134895 2grmA 317 49.66 2r7jA 317 51.63 2ojpA 292 52.77 2oemA 413 53.10 1ihuA 589 53.22 c.37.1.10,c.37.1.10 62394,62395 2anrA 178 53.44 1bw0A 416 53.79 c.67.1.1 34385 1b3uA 588 54.55 a.118.1.2 19135 2ehhA 294 54.74 1k2pA 263 55.18 d.144.1.7 72012 1zybA 232 55.20 a.4.5.4,b.82.3.2 125815,125816 1j98A 157 55.21 d.185.1.2 62755 1m15A 357 55.62 a.83.1.1,d.128.1.2 78368,78369 2i57A 438 56.22 2hnhA 910 56.30 1ub3A 220 56.46 c.1.10.1 88395 1cuk 203 57.68 1dj0A 264 58.00 d.265.1.1 90337 1a0cA 438 59.84 c.1.15.3 29529 1b89A 449 60.19 a.118.1.3 19138 2v9dA 343 60.64 2q83A 346 61.03 1cukA 203 61.80 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 3cyjA 372 62.63 2pywA 420 63.29 1vliA 385 63.62 b.85.1.1,c.1.10.6 108830,108831 1zgdA 312 64.54 2awiA 317 65.00 a.35.1.11,a.118.8.4 127435,127436 1jubA 311 65.98 c.1.4.1 90908 2b6cA 220 66.59 a.118.1.17 127983 1x3mA 415 67.25 c.55.1.2,c.55.1.2 121664,121665 2r8wA 332 67.42 1o5zA 442 67.85 c.59.1.2,c.72.2.2 92530,92531 2oxcA 230 68.18 2ahrA 259 69.65 a.100.1.10,c.2.1.6 126775,126776 3craA 265 70.42 1vs3A 249 71.47 1xm3A 264 71.57 c.1.31.1 115461 1p9qC 256 71.83 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 2pulA 397 72.40 1eswA 500 73.94 c.1.8.1 59500 1kidA 203 74.40 c.8.5.1 30771 1a6q 382 75.11 1vl2A 421 79.65 c.26.2.1,d.210.1.1 108708,108709 1k3eA 156 82.01 d.198.1.1 68103 1gk8A 475 82.46 c.1.14.1,d.58.9.1 65234,65235 2gvkA 317 82.66 d.58.4.14 135782 1pz1A 333 83.23 c.1.7.1 95390 1vb3A 428 83.86 c.79.1.1 119942 2atsA 292 85.01 c.1.10.1 127306 2is6A 680 86.06 2ipiA 521 86.15 1kid 203 86.22 1z3xA 238 86.51 a.118.1.22,a.261.1.1 124416,124417 2o2cA 613 87.07 1aisB 200 88.67 a.74.1.2,a.74.1.2 18384,18385 2nppB 449 89.29 a.118.1.20 138445