# List of top-scoring protein chains for T0427.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.30e-50 d.185.1.1,d.185.1.1 61166,61167 1hr7B 443 4.03e-50 d.185.1.1,d.185.1.1 61182,61183 2g47A 990 7.36e-48 1bccA 446 9.13e-48 d.185.1.1,d.185.1.1 58946,58947 2jg4A 990 1.02e-47 1qcrA 446 2.25e-46 d.185.1.1,d.185.1.1 59025,59026 1ppjA 446 2.45e-46 d.185.1.1,d.185.1.1 104252,104253 1sqbA 480 4.88e-46 d.185.1.1,d.185.1.1 105890,105891 1q2lA 939 2.05e-44 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 1hr6A 475 4.33e-41 d.185.1.1,d.185.1.1 61164,61165 2fgeA 995 2.30e-37 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1qcrB 423 1.07e-31 d.185.1.1,d.185.1.1 59027,59028 2bccB 422 1.10e-31 d.185.1.1,d.185.1.1 59051,59052 1bccB 422 1.52e-31 d.185.1.1,d.185.1.1 58948,58949 1ppjB 439 1.75e-31 d.185.1.1,d.185.1.1 104254,104255 1sqbB 453 2.59e-31 d.185.1.1,d.185.1.1 105892,105893 3cx5A 431 2.48e-30 1ezvA 430 1.99e-29 d.185.1.1,d.185.1.1 59541,59542 3cx5B 352 6.01e-15 1cqmA 101 0.9404 d.58.14.1 39321 1qjhA 101 1.084 d.58.14.1 39326 2bdqA 224 2.887 1rbsA 155 7.490 c.55.3.1 33558 3c3jA 384 8.263 1j02A 267 11.70 a.132.1.1 90732 2i0xA 85 12.39 2q22A 139 12.47 1jl1A 155 12.55 c.55.3.1 66821 2bkkB 169 13.50 1tiqA 180 13.60 d.108.1.1 107010 2bvzA 101 14.13 1h2vZ 156 14.27 d.58.7.1 76595 1mj0A 166 14.66 k.37.1.1 79174 1sk0A 140 15.02 1e6cA 173 15.04 c.37.1.2 59296 1rdbA 155 15.69 c.55.3.1 33561 2gzmA 267 16.13 1lavA 155 17.00 c.55.3.1 33554 1dvgA 267 17.13 a.132.1.1 19510 2aj4A 548 17.48 1f21A 155 18.20 c.55.3.1 33550 1qd7E 97 18.41 i.1.1.3 45868 1g1xA 98 18.41 d.58.14.1 39327 1risA 101 18.73 d.58.14.1 39314 1l2fA 369 18.98 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 91044,91045,91046,91047 1rdaA 155 20.05 c.55.3.1 33567 1wtbA 79 20.34 d.58.7.1 121256 1jxbA 155 20.55 c.55.3.1 71931 1rdcA 155 20.57 c.55.3.1 33568 1lawA 155 21.79 c.55.3.1 33557 1jzwA 140 22.77 c.47.1.12 67883 1iqtA 75 23.21 d.58.7.1 71279 1j9bA 141 23.79 c.47.1.12 66459 1sk2A 140 23.84 2rn2A 155 24.13 c.55.3.1 33551 1hh2P 344 24.95 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 2eyuA 261 25.02 1rbvA 155 25.10 c.55.3.1 33553 2qruA 274 26.24 2gtgA 83 26.73 a.64.1.1 135649 1s3cA 141 26.81 1s3dA 138 27.14 2z1gA 155 27.53 3bnyA 320 28.22 2pkfA 334 28.97 1iayA 428 29.09 c.67.1.4 62130 2p2cP 169 29.55 3b55A 451 30.23 1sk1A 140 32.75 2gwmA 200 33.68 2gwlA 200 35.03 1j8fA 323 35.36 c.31.1.5 62738 1q90A 292 36.10 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 1svxA 169 37.04 k.37.1.1 106058 1i9dA 141 38.18 c.47.1.12 66098 2qsjA 154 38.56 1kvaA 155 38.64 c.55.3.1 33559 2j8sD 169 38.70 1xr0B 129 38.77 b.55.1.2 115858 1d2fA 390 39.47 c.67.1.3 34411 1rbrA 155 41.59 c.55.3.1 33556 1kvcA 155 42.10 c.55.3.1 33560 1cs8A 316 42.60 d.3.1.1 37065 1wovA 250 43.12 a.132.1.1 121124 1o1tA 380 43.15 a.118.6.1 86551 1x0mA 403 43.33 c.67.1.1 121550 1jcrA 377 43.61 a.118.6.1 66506 1o5mA 377 43.82 a.118.6.1 92507 2db2A 119 44.42 2ggtA 164 45.47 c.47.1.10 135156 2pt7G 152 45.60 1q1vA 70 45.87 a.159.4.1 104479 1v5sA 126 46.56 d.129.6.1 108384 1f20A 435 47.00 b.43.4.1,c.25.1.4 64932,64933 2z1jA 155 47.20 1m12A 84 48.11 a.64.1.1 84745 2z9aA 88 48.83 2qypA 91 49.23 2z1iA 155 49.41 2fug2 181 49.50 2z20A 432 49.62 2ejnA 153 50.09 a.101.1.1,a.101.1.1 132279,132280 1wp0A 165 50.91 c.47.1.10 121132 1btmA 252 51.11 c.1.1.1 28513 2bxjA 101 51.28 2gqkA 173 51.90 1rbuA 155 51.94 c.55.3.1 33552 1sd8A 141 53.71 1tzvA 142 53.89 a.79.1.1 107526 1v9sA 208 54.78 c.61.1.1 119894 2btmA 252 54.99 c.1.1.1 28511 1eoeA 100 55.07 d.42.1.2 38638 1cjlA 312 55.22 d.3.1.1 37066 1kvbA 155 55.50 c.55.3.1 33562 2ckoA 390 56.09 2nxqA 134 56.74 1vlwA 217 56.94 c.1.10.1 108868 3crdA 100 61.96 a.77.1.3 18429 1paqA 189 62.41 a.118.1.14 94413 1e2vA 251 64.51 b.2.6.1,b.84.2.2 22468,28254 1rbtA 155 64.56 c.55.3.1 33555 1e2zA 251 64.92 b.2.6.1,b.84.2.2 22477,28263 1e2wA 251 65.21 b.2.6.1,b.84.2.2 22466,28252 1x42A 232 65.37 c.108.1.1 121677 1cfmA 251 65.55 b.2.6.1,b.84.2.2 22471,28257 2qy1A 330 65.74 3b7cA 122 65.95 1yhuB 144 66.06 2bkxA 242 66.99 1louA 101 67.56 d.58.14.1 39323 1uc6A 109 68.85 b.1.2.1 107766 1ml4A 308 69.23 c.78.1.1,c.78.1.1 79255,79256 1o73A 144 71.75 c.47.1.10 86638 2oieA 111 72.01 a.204.1.2 139092 2gszA 363 73.04 1zynA 202 74.87 c.47.1.2,c.47.1.2 125838,125839 1gxsB 158 75.34 2q4pA 170 76.04 1wa3A 205 76.13 c.1.10.1 120802 3b93A 133 76.48 1exbE 103 77.33 d.42.1.2 38643 1rc6A 261 77.69 b.82.1.11 97287 2h6fA 382 78.23 a.118.6.1 136185 1m4jA 142 78.74 d.109.1.2 78602 2f0yA 379 78.97 a.118.6.1 132681 3b5iA 374 79.86 1ctmA 250 79.94 b.2.6.1,b.84.2.2 22465,28251 1hczA 252 80.80 b.2.6.1,b.84.2.2 22464,28250 1r9cA 139 80.83 d.32.1.2 97255 1nekC 129 81.01 f.21.2.2 80431 2edbA 116 81.56 1xk1A 233 81.95 a.132.1.1 122053 1awcB 153 83.20 d.211.1.1 19156 2z1hA 155 84.63 1uelA 95 84.87 d.15.1.1 99265 2a5zA 262 86.44 b.29.1.24 126184 2cokA 113 88.31 2q1mA 130 88.67 1wshA 155 88.85 c.55.3.1 114849 1u0oC 208 89.72 2qxzA 330 89.89