# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.54e-56 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 7.70e-56 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 1.02e-54 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 6.25e-54 1kb9A 431 3.36e-53 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 1.64e-52 d.185.1.1,d.185.1.1 59541,59542 2g47A 990 2.97e-52 1q2lA 939 1.23e-50 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 1.16e-47 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 4.51e-40 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 9.26e-40 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 1.26e-38 1wyuB 474 0.9413 c.67.1.7 121453 1c7nA 399 1.598 c.67.1.3 34413 3broA 141 2.885 3buvA 326 3.232 3bpvA 138 3.296 1xi9A 406 3.620 c.67.1.1 115355 2dgmA 466 3.866 c.67.1.6 131508 1i1iP 681 4.133 d.92.1.5 40297 2fa5A 162 4.471 1bw0A 416 5.056 c.67.1.1 34385 1d2fA 390 5.237 c.67.1.3 34411 2hoxA 427 5.573 c.67.1.1 136644 1w7lA 422 5.888 c.67.1.1 109226 1wovA 250 5.966 a.132.1.1 121124 1ynuA 473 6.808 c.67.1.4 123762 2rdpA 150 7.110 3bj6A 152 7.293 1aisB 200 7.665 a.74.1.2,a.74.1.2 18384,18385 1m6sA 347 7.877 c.67.1.1 78701 2p4fA 299 8.142 1m7yA 435 8.588 c.67.1.4 78761 3bjaA 139 8.637 1txdA 385 9.179 a.87.1.1,b.55.1.1 107422,107423 1kl1A 419 11.08 c.67.1.4 72663 2hdyA 440 11.64 2z20A 432 11.74 1zybA 232 12.18 a.4.5.4,b.82.3.2 125815,125816 3c5iA 369 12.32 2c8mA 262 12.67 2q83A 346 12.77 2gxgA 146 13.02 2nyxA 168 13.57 2hr3A 147 13.91 a.4.5.28 136678 2douA 376 14.47 1j7lA 264 14.51 d.144.1.6 62697 2fbhA 146 14.95 a.4.5.28 133245 1ki1B 352 15.08 a.87.1.1,b.55.1.1 72497,72498 2qfjA 216 15.22 1yizA 429 16.51 c.67.1.1 123375 1zzkA 82 16.87 d.51.1.1 125909 1lk9A 448 17.04 c.67.1.1 78057 2ethA 154 17.20 a.4.5.28 132358 1u08A 386 17.58 c.67.1.1 107543 1l5aA 436 17.67 c.43.1.2,c.43.1.2 75923,75924 1b8gA 429 18.34 c.67.1.4 34499 1d8dA 377 18.98 a.118.6.1 19185 1gdeA 389 19.01 c.67.1.1 60456 1jyoA 130 19.16 d.198.1.1 67483 1bjnA 360 19.16 c.67.1.4 34469 1bl3A 160 19.20 c.55.3.2 33655 3csvA 333 19.39 2nnnA 140 19.49 3boqA 160 19.49 1lj9A 144 19.95 a.4.5.28 78035 3bddA 142 20.08 2i7qA 402 21.86 1ofgA 381 22.03 c.2.1.3,d.81.1.5 30064,39979 2f2gA 221 22.16 a.132.1.3 132816 2qcxA 263 22.85 2qr4A 587 23.38 1s3jA 155 24.03 a.4.5.28 98437 1tyhA 248 24.42 a.132.1.3 107458 1jg8A 347 24.67 c.67.1.1 62946 2bbrA 195 27.13 3bwnA 391 27.25 1vp4A 425 27.49 c.67.1.1 113935 1jf9A 408 27.52 c.67.1.3 62931 2gnxA 365 27.78 2c0rA 362 29.75 c.67.1.4 129604 1rtwA 220 30.14 a.132.1.3 97823 1vjeA 166 30.29 d.185.1.2 100807 3bhpA 60 30.50 1lnwA 147 30.70 a.4.5.28 78104 1w23A 360 30.83 c.67.1.4 114088 2o36A 674 31.19 1f44A 324 32.20 a.60.9.1,d.163.1.1 64982,64983 2d1eA 248 32.39 2cdnA 201 33.74 c.37.1.1 130289 3cedA 98 33.96 2b5hA 200 34.16 b.82.1.19 127894 1bj4A 470 34.22 c.67.1.4 34479 1wstA 417 34.25 c.67.1.1 121244 1zejA 293 34.80 1pmmA 466 34.85 c.67.1.6 94901 1t3iA 420 35.14 c.67.1.3 106354 1i6xA 209 35.36 a.4.5.4,b.82.3.2 83673,83674 2hufA 393 38.04 1k3eA 156 38.42 d.198.1.1 68103 1fxlA 167 38.58 d.58.7.1,d.58.7.1 39183,39184 1in4A 334 39.01 a.4.5.11,c.37.1.20 62597,62598 1ub0A 258 40.26 c.72.1.2 88394 1a0p 290 40.64 1yadA 221 41.52 1m32A 366 41.88 c.67.1.3 78508 2fbiA 142 42.07 a.4.5.28 133246 2dt9A 167 42.32 1dfoA 417 42.78 c.67.1.4 34480 2dtjA 178 44.48 2c40A 312 45.60 3bosA 242 46.45 2a61A 145 46.66 a.4.5.28 126187 1v2dA 381 46.67 c.67.1.1 108281 2id3A 225 47.47 a.4.1.9,a.121.1.1 137261,137262 1jayA 212 47.53 c.2.1.6 66478 2di4A 238 48.01 a.269.1.1 131522 2cohA 202 49.60 a.4.5.4,b.82.3.2 130677,130678 2bv6A 142 49.66 2pftA 571 50.58 2q4xA 221 51.15 a.132.1.3 139880 1tltA 319 51.50 c.2.1.3,d.81.1.5 107135,107136 2r2nA 425 52.39 2ct9A 208 52.55 2q4eA 362 53.38 2anrA 178 53.58 1j98A 157 53.66 d.185.1.2 62755 1frb 315 54.79 3btxA 204 56.03 2dtvA 397 56.52 1j6wA 175 57.20 d.185.1.2 62663 2ho3A 325 57.74 1ihgA 370 58.70 a.118.8.1,b.62.1.1 62380,62381 3ceaA 346 59.17 1t0fA 276 59.28 a.4.5.27,c.52.1.16 112195,112196 2dr1A 386 59.30 3bu8A 235 59.60 1eg5A 384 61.38 c.67.1.3 34429 2cxaA 256 61.58 d.108.1.6 130993 1huw 166 62.23 2e2rA 244 63.31 1n45A 233 64.33 a.132.1.1 79981 2vooA 193 64.54 1rec 201 65.26 3crjA 199 66.20 1qj5A 429 66.24 c.67.1.4 34493 1s1eA 224 67.69 a.39.1.5 112007 2qrrA 101 69.34 1f5qB 252 70.20 a.74.1.1,a.74.1.1 18362,18363 1lucB 324 70.40 c.1.16.1 29548 1fsiA 189 70.90 d.61.1.1 39536 2ig7A 401 71.39 2ho1A 252 72.12 1xnfA 275 72.19 a.118.8.1 115580 1mi3A 322 72.20 c.1.7.1 91274 1o69A 394 72.74 c.67.1.4 92560 1iugA 352 73.65 c.67.1.3 90699 2pyqA 114 73.85 2gb3A 409 74.41 c.67.1.1 134903 2masA 314 74.46 c.70.1.1 34810 3crrA 323 74.46 1wzdA 215 76.10 a.132.1.1 121493 2fd5A 180 76.96 a.4.1.9,a.121.1.1 133291,133292 1e8aA 91 77.53 a.39.1.2 17188 1z3xA 238 78.94 a.118.1.22,a.261.1.1 124416,124417 1yozA 116 79.00 a.253.1.1 123796 1p5tA 127 80.22 b.55.1.2 94148 3bc8A 450 80.24 2p90A 319 80.28 1j7gA 144 80.45 c.110.1.1 84130 1xd7A 145 82.35 a.4.5.55 109566 3bczA 293 83.14 2j6gA 266 83.38 2tysA 268 85.95 c.1.2.4 28572 2fp1A 166 88.26 a.130.1.4 133891 1htqA 477 88.67 d.15.9.1,d.128.1.1 71035,71036 1yzbA 182 89.31 1wyuA 438 89.45 c.67.1.7 121452