# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 9.00e-60 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 1.81e-58 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 1.34e-57 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 1.19e-56 1kb9A 431 3.96e-56 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 1.60e-55 d.185.1.1,d.185.1.1 59541,59542 2g47A 990 1.13e-54 1q2lA 939 2.02e-53 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 6.17e-50 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 9.37e-42 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 2.01e-41 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 1.03e-40 1wyuB 474 0.8327 c.67.1.7 121453 3broA 141 2.442 1c7nA 399 2.771 c.67.1.3 34413 3bpvA 138 3.235 1d2fA 390 3.579 c.67.1.3 34411 2dgmA 466 4.877 c.67.1.6 131508 2c8mA 262 5.401 1m7yA 435 5.751 c.67.1.4 78761 1ynuA 473 6.052 c.67.1.4 123762 2hoxA 427 6.164 c.67.1.1 136644 3cjnA 162 6.629 2fa5A 162 6.800 3bjaA 139 7.251 2i7qA 402 8.021 2q83A 346 8.054 3bj6A 152 8.461 2cdnA 201 8.642 c.37.1.1 130289 1bw0A 416 9.005 c.67.1.1 34385 2qfjA 216 9.174 2p4fA 299 9.278 3c5iA 369 9.332 2gnxA 365 9.593 1i1iP 681 9.692 d.92.1.5 40297 2rdpA 150 10.09 1jyoA 130 10.13 d.198.1.1 67483 2nnnA 140 10.99 1j7lA 264 11.07 d.144.1.6 62697 1wovA 250 11.08 a.132.1.1 121124 2gxgA 146 11.86 3csvA 333 11.89 2hdyA 440 12.08 2douA 376 12.44 1l5aA 436 12.86 c.43.1.2,c.43.1.2 75923,75924 1xi9A 406 13.10 c.67.1.1 115355 3boqA 160 13.41 2nyxA 168 14.75 1lk9A 448 15.11 c.67.1.1 78057 2z20A 432 15.54 1ofgA 381 15.88 c.2.1.3,d.81.1.5 30064,39979 1aisB 200 16.08 a.74.1.2,a.74.1.2 18384,18385 2fbhA 146 16.16 a.4.5.28 133245 2hr3A 147 16.89 a.4.5.28 136678 1kl1A 419 16.89 c.67.1.4 72663 1lj9A 144 17.44 a.4.5.28 78035 2c40A 312 17.87 2qr4A 587 17.96 1m6sA 347 18.47 c.67.1.1 78701 1zzkA 82 19.30 d.51.1.1 125909 1w7lA 422 20.94 c.67.1.1 109226 1vp4A 425 22.31 c.67.1.1 113935 2ethA 154 22.74 a.4.5.28 132358 1b8gA 429 22.98 c.67.1.4 34499 1k3eA 156 23.14 d.198.1.1 68103 1lnwA 147 23.22 a.4.5.28 78104 2f2gA 221 23.71 a.132.1.3 132816 1s3jA 155 23.72 a.4.5.28 98437 1txdA 385 23.74 a.87.1.1,b.55.1.1 107422,107423 1j98A 157 23.79 d.185.1.2 62755 1zybA 232 24.63 a.4.5.4,b.82.3.2 125815,125816 3bddA 142 25.52 2di4A 238 26.67 a.269.1.1 131522 2pftA 571 26.75 1bjnA 360 27.90 c.67.1.4 34469 2d1eA 248 28.54 1zejA 293 29.57 1jg8A 347 29.95 c.67.1.1 62946 1in4A 334 30.20 a.4.5.11,c.37.1.20 62597,62598 1bj4A 470 31.21 c.67.1.4 34479 1xd7A 145 31.31 a.4.5.55 109566 1gdeA 389 32.39 c.67.1.1 60456 2dtvA 397 32.99 3d1uA 288 33.73 2bbrA 195 34.49 2q4xA 221 34.76 a.132.1.3 139880 1e8aA 91 34.85 a.39.1.2 17188 1fxlA 167 35.45 d.58.7.1,d.58.7.1 39183,39184 1u08A 386 35.46 c.67.1.1 107543 1ihgA 370 35.59 a.118.8.1,b.62.1.1 62380,62381 2fbiA 142 35.60 a.4.5.28 133246 1tltA 319 37.20 c.2.1.3,d.81.1.5 107135,107136 1vqqA 646 37.62 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1f44A 324 37.84 a.60.9.1,d.163.1.1 64982,64983 2bv6A 142 37.85 1pmmA 466 38.57 c.67.1.6 94901 1bl3A 160 39.39 c.55.3.2 33655 3bu8A 235 39.76 2fd5A 180 40.44 a.4.1.9,a.121.1.1 133291,133292 1wstA 417 40.69 c.67.1.1 121244 1f5qB 252 40.77 a.74.1.1,a.74.1.1 18362,18363 1rv3A 483 42.80 c.67.1.4 105101 1d8dA 377 43.68 a.118.6.1 19185 2b5hA 200 45.02 b.82.1.19 127894 1htqA 477 45.41 d.15.9.1,d.128.1.1 71035,71036 2ig7A 401 45.84 2cohA 202 46.18 a.4.5.4,b.82.3.2 130677,130678 3bwnA 391 46.37 1yizA 429 46.85 c.67.1.1 123375 2a61A 145 47.99 a.4.5.28 126187 1kqpA 271 48.16 c.26.2.1 72883 2ho3A 325 48.84 1nfpA 228 49.73 c.1.16.2 29555 1a4pA 96 49.93 a.39.1.2 17176 1juvA 193 50.08 c.71.1.1 90912 1jf9A 408 51.30 c.67.1.3 62931 1a0p 290 51.67 1jayA 212 51.76 c.2.1.6 66478 2q91A 101 52.88 3bhpA 60 53.73 1n45A 233 53.87 a.132.1.1 79981 1qlsA 99 55.59 a.39.1.2 17185 2c0rA 362 56.20 c.67.1.4 129604 1hynP 379 56.85 d.112.1.2 61408 1dfoA 417 57.28 c.67.1.4 34480 2cxaA 256 57.33 d.108.1.6 130993 1fsiA 189 60.13 d.61.1.1 39536 1lucB 324 60.72 c.1.16.1 29548 2anrA 178 60.92 2v7fA 150 61.02 1w23A 360 61.38 c.67.1.4 114088 1i6xA 209 62.56 a.4.5.4,b.82.3.2 83673,83674 1s1eA 224 62.69 a.39.1.5 112007 1sk7A 198 63.51 a.132.1.2 105671 1rtwA 220 63.63 a.132.1.3 97823 2bvcA 486 64.66 d.15.9.1,d.128.1.1 129243,129244 2o36A 674 64.79 2dtjA 178 66.59 2ct9A 208 66.80 3btxA 204 67.36 2qcxA 263 67.79 2masA 314 68.33 c.70.1.1 34810 2pyqA 114 68.87 2q4eA 362 69.04 1ki1B 352 69.49 a.87.1.1,b.55.1.1 72497,72498 1vjeA 166 70.12 d.185.1.2 100807 1j6wA 175 70.32 d.185.1.2 62663 1qo0D 196 70.34 c.23.1.3 31125 1p5tA 127 70.36 b.55.1.2 94148 1tyhA 248 71.13 a.132.1.3 107458 1huw 166 72.07 3c1vA 113 72.28 2e5aA 347 72.87 2ywrA 216 73.13 3ceaA 346 73.25 1yadA 221 75.11 1iugA 352 75.36 c.67.1.3 90699 3bczA 293 75.60 1z3xA 238 75.89 a.118.1.22,a.261.1.1 124416,124417 2r40D 266 76.64 1nw1A 429 76.74 d.144.1.8 86286 2ag5A 246 77.28 c.2.1.2 126719 1frb 315 77.54 2jg2A 422 78.99 2p90A 319 79.13 3cedA 98 79.41 3bosA 242 80.15 1xrkA 124 80.59 d.32.1.2 115881 1f07A 321 80.84 c.1.16.3 59560 2qguA 211 81.56 1m32A 366 81.87 c.67.1.3 78508 1v2dA 381 82.21 c.67.1.1 108281 1lc5A 364 82.94 c.67.1.1 73827 2hufA 393 84.16 1hw5A 210 84.20 a.4.5.4,b.82.3.2 16098,28137 2qrrA 101 84.32 1xjzA 233 84.37 a.132.1.1 122049 1yzbA 182 85.32 3buvA 326 86.43 1x2gA 337 87.27 2dr1A 386 89.90