# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 2.35e-51 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 3.64e-50 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 3.09e-49 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 7.72e-49 1kb9A 431 2.29e-48 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 1.54e-47 d.185.1.1,d.185.1.1 59541,59542 2g47A 990 5.80e-47 1q2lA 939 1.05e-45 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 4.79e-43 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 1.41e-35 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 1.72e-35 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 1.46e-34 1wyuB 474 1.837 c.67.1.7 121453 3bpvA 138 2.083 2fa5A 162 2.143 2p4fA 299 2.312 3broA 141 2.455 3boqA 160 2.943 1zybA 232 3.089 a.4.5.4,b.82.3.2 125815,125816 1rec 201 3.488 3cjnA 162 4.111 2c8mA 262 4.299 1d2fA 390 4.710 c.67.1.3 34411 1xi9A 406 4.790 c.67.1.1 115355 2rdpA 150 4.991 2hr3A 147 5.367 a.4.5.28 136678 3bj6A 152 5.696 1aisB 200 6.030 a.74.1.2,a.74.1.2 18384,18385 3bjaA 139 6.127 2gxgA 146 6.571 2nnnA 140 6.764 1lj9A 144 7.708 a.4.5.28 78035 1lnwA 147 8.242 a.4.5.28 78104 1c7nA 399 8.799 c.67.1.3 34413 1omrA 201 8.972 a.39.1.5 93349 1m6sA 347 9.084 c.67.1.1 78701 2bbrA 195 9.579 1s3jA 155 9.617 a.4.5.28 98437 2douA 376 9.657 2ethA 154 9.789 a.4.5.28 132358 2fbhA 146 10.86 a.4.5.28 133245 1g8iA 190 11.03 a.39.1.5 60363 3csvA 333 11.18 3c5iA 369 11.34 1wovA 250 11.62 a.132.1.1 121124 2nyxA 168 11.96 1xd7A 145 12.17 a.4.5.55 109566 2hoxA 427 12.67 c.67.1.1 136644 1w7lA 422 12.72 c.67.1.1 109226 1jg8A 347 13.69 c.67.1.1 62946 3bddA 142 15.11 1u5tA 233 15.87 a.4.5.54,a.4.5.54 107684,107685 1e8aA 91 16.50 a.39.1.2 17188 2z20A 432 16.66 2i7qA 402 17.09 1zzkA 82 17.70 d.51.1.1 125909 1a4pA 96 17.79 a.39.1.2 17176 1f5qB 252 17.99 a.74.1.1,a.74.1.1 18362,18363 1jayA 212 18.92 c.2.1.6 66478 1jyoA 130 19.20 d.198.1.1 67483 2i88A 191 19.74 1gdeA 389 19.76 c.67.1.1 60456 1ynuA 473 19.84 c.67.1.4 123762 1htqA 477 20.16 d.15.9.1,d.128.1.1 71035,71036 2qfjA 216 20.36 1i6xA 209 20.45 a.4.5.4,b.82.3.2 83673,83674 1m7yA 435 21.23 c.67.1.4 78761 1f44A 324 21.25 a.60.9.1,d.163.1.1 64982,64983 1j7lA 264 21.48 d.144.1.6 62697 2f2gA 221 22.16 a.132.1.3 132816 2qcxA 263 22.36 2dgmA 466 22.87 c.67.1.6 131508 2jgzB 260 23.72 3c1vA 113 23.97 1qlsA 99 24.84 a.39.1.2 17185 1s6cA 183 25.98 a.39.1.5 98594 2q83A 346 26.02 2q91A 101 26.11 2ccmA 191 26.57 3bhpA 60 27.41 1bw0A 416 27.69 c.67.1.1 34385 2cdnA 201 29.13 c.37.1.1 130289 2uv0E 175 29.45 2dr1A 386 29.79 1rtwA 220 30.24 a.132.1.3 97823 2qg7A 458 30.31 1kqpA 271 30.82 c.26.2.1 72883 2h2kA 106 31.19 3buvA 326 31.42 2tysA 268 31.78 c.1.2.4 28572 1xfrA 128 32.60 1sk7A 198 32.77 a.132.1.2 105671 1s1eA 224 32.79 a.39.1.5 112007 1k3eA 156 33.08 d.198.1.1 68103 2fbiA 142 33.36 a.4.5.28 133246 2bv6A 142 33.47 2q4xA 221 33.52 a.132.1.3 139880 1lucB 324 33.84 c.1.16.1 29548 1hw5A 210 33.85 a.4.5.4,b.82.3.2 16098,28137 2r40D 266 33.87 1bjnA 360 33.96 c.67.1.4 34469 1vp4A 425 35.64 c.67.1.1 113935 2bvcA 486 35.92 d.15.9.1,d.128.1.1 129243,129244 1z67A 135 38.04 a.259.1.1 124507 2e2rA 244 38.82 1b8gA 429 38.88 c.67.1.4 34499 1i1iP 681 39.55 d.92.1.5 40297 2yviA 111 39.75 2aaoA 166 40.02 2h61A 92 40.68 a.39.1.2 136169 3btxA 204 42.55 2hdyA 440 42.95 1dfoA 417 43.27 c.67.1.4 34480 1xjzA 233 44.55 a.132.1.1 122049 1tyhA 248 44.96 a.132.1.3 107458 1wdcB 156 46.56 a.39.1.5 17302 2cohA 202 48.61 a.4.5.4,b.82.3.2 130677,130678 1iugA 352 49.66 c.67.1.3 90699 1qo0D 196 50.85 c.23.1.3 31125 1m32A 366 51.22 c.67.1.3 78508 2a61A 145 52.17 a.4.5.28 126187 2ct9A 208 52.50 1mi3A 322 52.51 c.1.7.1 91274 1n45A 233 52.60 a.132.1.1 79981 1s69A 124 52.77 a.1.1.1 105305 1sg4A 260 53.04 c.14.1.3 118957 1ci9A 392 53.68 e.3.1.1 64767 2p71A 132 53.75 a.39.2.1 139516 2egdA 98 53.85 2c40A 312 53.91 1iw0A 215 55.22 a.132.1.1 83720 1t3iA 420 55.41 c.67.1.3 106354 1yqsA 349 55.72 e.3.1.1 123899 1frb 315 55.83 1exrA 148 55.93 a.39.1.5 17299 2f6lA 166 56.87 a.130.1.4 133049 1nvpB 57 57.16 a.32.1.1 92211 2d1eA 248 58.70 1fsiA 189 59.05 d.61.1.1 39536 3cedA 98 59.06 1ofgA 381 59.07 c.2.1.3,d.81.1.5 30064,39979 1a0pA 290 60.56 a.60.9.1,d.163.1.1 18105,42165 2g2bA 150 61.45 1ksoA 101 61.66 a.39.1.2 72926 1auiB 169 62.03 a.39.1.5 17325 1mh1 186 62.14 1nw1A 429 62.37 d.144.1.8 86286 1s9pA 227 62.91 a.123.1.1 105384 1pmmA 466 64.12 c.67.1.6 94901 1pwgA 349 64.49 e.3.1.1 104340 1rwyA 109 67.76 a.39.1.4 98002 1yizA 429 67.77 c.67.1.1 123375 1fe0A 68 68.12 d.58.17.1 39345 2dt9A 167 68.55 1ef8A 261 68.58 c.14.1.3 30921 1wstA 417 68.72 c.67.1.1 121244 1f07A 321 68.75 c.1.16.3 59560 1j98A 157 69.86 d.185.1.2 62755 1xo5A 183 70.16 a.39.1.5 115680 1xo0A 324 70.29 a.60.9.1,d.163.1.1 115674,115675 2ig7A 401 70.34 1u08A 386 70.48 c.67.1.1 107543 1yakA 263 70.86 a.132.1.3 122833 2agtA 319 71.02 2hufA 393 71.12 2c0rA 362 71.45 c.67.1.4 129604 2b5hA 200 71.58 b.82.1.19 127894 1a0p 290 71.66 1fadA 99 72.16 a.77.1.2 18428 2gnxA 365 72.51 1lk9A 448 72.51 c.67.1.1 78057 2di4A 238 72.70 a.269.1.1 131522 2dtvA 397 72.83 2e5aA 347 72.98 2f1sA 186 73.33 2masA 314 73.82 c.70.1.1 34810 2cxaA 256 74.15 d.108.1.6 130993 1zejA 293 74.48 3ceaA 346 74.62 1jf9A 408 75.39 c.67.1.3 62931 1l5aA 436 76.00 c.43.1.2,c.43.1.2 75923,75924 1yzbA 182 77.50 2gpuA 230 77.78 a.123.1.1 135493 1vin 268 77.81 2dtjA 178 79.26 1w23A 360 79.64 c.67.1.4 114088 1yozA 116 80.14 a.253.1.1 123796 1vddA 228 80.52 e.49.1.1 108519 2jg2A 422 80.88 1x2gA 337 80.97 3bczA 293 82.35 1ad4A 266 82.44 c.1.21.1 29670 2ho1A 252 84.16 1us0A 316 85.43 c.1.7.1 99850 2fbkA 181 85.96 a.4.5.28 133247 1ggzA 148 86.08 a.39.1.5 70176 2ekgA 327 86.69 1kk8B 139 88.29 a.39.1.5 77430 1sdeA 347 89.25 e.3.1.1 112073 1kl1A 419 89.26 c.67.1.4 72663 1vbjA 281 89.32 2hp0A 466 89.59 3bwnA 391 89.97