# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 8.48e-58 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 1.35e-56 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 9.86e-56 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 1.77e-54 1kb9A 431 1.66e-53 d.185.1.1,d.185.1.1 77311,77312 2g47A 990 3.75e-53 1ezvA 430 9.24e-53 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 8.31e-52 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 9.41e-49 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 1.45e-41 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 7.45e-41 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 1.12e-39 1wyuB 474 0.5950 c.67.1.7 121453 3bpvA 138 1.739 1i1iP 681 1.765 d.92.1.5 40297 3buvA 326 1.994 1m6sA 347 2.213 c.67.1.1 78701 3broA 141 2.283 1wovA 250 3.344 a.132.1.1 121124 1c7nA 399 3.387 c.67.1.3 34413 1rtwA 220 4.179 a.132.1.3 97823 2p4fA 299 4.460 3boqA 160 5.531 1bw0A 416 5.818 c.67.1.1 34385 2hoxA 427 6.222 c.67.1.1 136644 2rdpA 150 6.272 2fa5A 162 6.496 1jg8A 347 6.535 c.67.1.1 62946 1w7lA 422 6.579 c.67.1.1 109226 1aisB 200 6.726 a.74.1.2,a.74.1.2 18384,18385 3bj6A 152 7.075 2id3A 225 7.643 a.4.1.9,a.121.1.1 137261,137262 1zybA 232 7.753 a.4.5.4,b.82.3.2 125815,125816 2fd5A 180 8.426 a.4.1.9,a.121.1.1 133291,133292 1a0pA 290 8.449 a.60.9.1,d.163.1.1 18105,42165 1d2fA 390 9.138 c.67.1.3 34411 1xi9A 406 9.713 c.67.1.1 115355 1zzkA 82 9.731 d.51.1.1 125909 2nyxA 168 9.98 3bjaA 139 10.12 2qcxA 263 11.11 1kl1A 419 11.38 c.67.1.4 72663 1in4A 334 12.20 a.4.5.11,c.37.1.20 62597,62598 2gxgA 146 12.42 2hr3A 147 13.33 a.4.5.28 136678 2aaoA 166 13.83 1lj9A 144 14.00 a.4.5.28 78035 2fbhA 146 14.19 a.4.5.28 133245 1gdeA 389 14.22 c.67.1.1 60456 1f44A 324 15.68 a.60.9.1,d.163.1.1 64982,64983 2douA 376 16.06 3d1uA 288 16.11 1m7yA 435 16.41 c.67.1.4 78761 1ynuA 473 16.51 c.67.1.4 123762 1l5aA 436 16.79 c.43.1.2,c.43.1.2 75923,75924 2bbrA 195 16.91 2f2gA 221 17.24 a.132.1.3 132816 1lk9A 448 17.35 c.67.1.1 78057 1lnwA 147 17.86 a.4.5.28 78104 2o36A 674 17.98 3bwnA 391 18.06 2hdyA 440 18.62 2z20A 432 19.10 1bl3A 160 19.48 c.55.3.2 33655 2dgmA 466 19.83 c.67.1.6 131508 1vp4A 425 20.75 c.67.1.1 113935 1j7lA 264 21.16 d.144.1.6 62697 1w23A 360 21.48 c.67.1.4 114088 1b8gA 429 21.61 c.67.1.4 34499 1tyhA 248 22.14 a.132.1.3 107458 2cdnA 201 22.21 c.37.1.1 130289 2ethA 154 22.45 a.4.5.28 132358 1s3jA 155 22.52 a.4.5.28 98437 1dfoA 417 24.88 c.67.1.4 34480 1ub0A 258 24.89 c.72.1.2 88394 2qfjA 216 24.99 1zejA 293 27.00 2q83A 346 28.04 1yadA 221 29.52 1yakA 263 29.58 a.132.1.3 122833 1nfpA 228 29.79 c.1.16.2 29555 2tysA 268 30.01 c.1.2.4 28572 2dtjA 178 30.95 2qg7A 458 31.36 3c5iA 369 31.64 2dtvA 397 32.69 2vooA 193 32.96 1xnfA 275 33.01 a.118.8.1 115580 2i7qA 402 33.37 2nnnA 140 33.47 2anrA 178 33.52 3crjA 199 34.22 3csvA 333 34.56 2dt9A 167 34.99 2a61A 145 36.28 a.4.5.28 126187 1m32A 366 36.57 c.67.1.3 78508 2grjA 192 36.92 1yizA 429 37.34 c.67.1.1 123375 2b5hA 200 37.74 b.82.1.19 127894 1wstA 417 37.79 c.67.1.1 121244 3btxA 204 38.54 2q1zA 184 38.95 2qrwA 128 39.32 3bddA 142 40.00 1a0p 290 40.13 1fxlA 167 41.22 d.58.7.1,d.58.7.1 39183,39184 2g2bA 150 41.68 2ho1A 252 41.81 2hufA 393 42.89 2qcoA 210 43.68 1htqA 477 43.72 d.15.9.1,d.128.1.1 71035,71036 1ofgA 381 44.35 c.2.1.3,d.81.1.5 30064,39979 2ct9A 208 44.45 2cxaA 256 45.77 d.108.1.6 130993 3bs9A 87 46.36 1qvtA 194 46.78 a.4.1.9,a.121.1.1 104602,104603 3cedA 98 47.19 2f9dA 125 47.65 d.58.7.1 133159 2pyqA 114 48.20 1bjnA 360 48.72 c.67.1.4 34469 1iugA 352 48.81 c.67.1.3 90699 1ki1B 352 48.92 a.87.1.1,b.55.1.1 72497,72498 1sl8A 191 49.09 a.39.1.5 112099 1oohA 126 49.14 a.39.2.1 93383 2di4A 238 49.88 a.269.1.1 131522 1auiB 169 49.93 a.39.1.5 17325 1j7gA 144 51.11 c.110.1.1 84130 2cohA 202 53.93 a.4.5.4,b.82.3.2 130677,130678 2hp0A 466 54.12 2fbiA 142 54.27 a.4.5.28 133246 2bv6A 142 54.59 3bjhA 119 54.71 1u08A 386 55.95 c.67.1.1 107543 1i6xA 209 56.59 a.4.5.4,b.82.3.2 83673,83674 2fp1A 166 56.70 a.130.1.4 133891 1jf9A 408 57.07 c.67.1.3 62931 1jf2A 195 57.32 a.39.1.5 62930 3cdlA 203 57.66 2hpsA 186 57.98 2r2nA 425 58.58 1z3xA 238 58.68 a.118.1.22,a.261.1.1 124416,124417 2zg5A 397 59.26 2c8mA 262 59.90 1pmmA 466 60.12 c.67.1.6 94901 1na3A 91 60.30 k.38.1.1 85481 1d8dA 377 60.48 a.118.6.1 19185 1n45A 233 60.87 a.132.1.1 79981 1t3iA 420 61.04 c.67.1.3 106354 3bhpA 60 61.38 2dobA 83 61.65 2qr4A 587 62.92 1fe0A 68 63.03 d.58.17.1 39345 1juvA 193 63.09 c.71.1.1 90912 1bj4A 470 65.84 c.67.1.4 34479 1jyoA 130 67.23 d.198.1.1 67483 1wzdA 215 67.43 a.132.1.1 121493 2c0rA 362 67.62 c.67.1.4 129604 1s69A 124 67.65 a.1.1.1 105305 2pftA 571 68.73 3bosA 242 69.13 2d1eA 248 69.13 3bczA 293 69.91 2j6gA 266 70.04 1zin 217 70.18 1ew6A 137 70.37 a.1.1.2 15637 3ccyA 203 70.69 1elwA 118 71.02 a.118.8.1 19207 1o3yA 166 72.30 c.37.1.8 86618 2ondA 308 72.39 2ou3A 161 72.40 1nvpB 57 73.88 a.32.1.1 92211 3bqpA 80 73.89 1a4pA 96 74.06 a.39.1.2 17176 1hw5A 210 74.27 a.4.5.4,b.82.3.2 16098,28137 2q4xA 221 74.40 a.132.1.3 139880 1e8aA 91 74.82 a.39.1.2 17188 2nugA 221 75.80 1f5qB 252 76.78 a.74.1.1,a.74.1.1 18362,18363 1eyvA 156 77.12 a.79.1.1 18446 1itg 166 78.45 1fsiA 189 78.92 d.61.1.1 39536 2uv0E 175 79.20 1qo0D 196 80.28 c.23.1.3 31125 2v7fA 150 81.05 1y791 680 83.09 1jayA 212 84.11 c.2.1.6 66478 2fq4A 192 87.91 a.4.1.9,a.121.1.1 133937,133938 2bvcA 486 88.41 d.15.9.1,d.128.1.1 129243,129244 2dr1A 386 88.89