# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 4.91e-58 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 7.06e-57 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 8.02e-56 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 7.59e-55 1kb9A 431 7.13e-54 d.185.1.1,d.185.1.1 77311,77312 2g47A 990 3.00e-53 1ezvA 430 5.02e-53 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 6.69e-52 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 9.94e-49 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 1.38e-41 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 6.71e-41 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 8.04e-40 1wyuB 474 0.5958 c.67.1.7 121453 3bpvA 138 1.645 3broA 141 1.852 3buvA 326 2.272 1m6sA 347 2.931 c.67.1.1 78701 1i1iP 681 3.120 d.92.1.5 40297 1c7nA 399 3.156 c.67.1.3 34413 3boqA 160 3.481 2fa5A 162 4.404 1kl1A 419 4.534 c.67.1.4 72663 2hoxA 427 4.895 c.67.1.1 136644 1bw0A 416 4.971 c.67.1.1 34385 2rdpA 150 5.267 1wovA 250 5.613 a.132.1.1 121124 2p4fA 299 6.097 1aisB 200 6.155 a.74.1.2,a.74.1.2 18384,18385 2fd5A 180 6.745 a.4.1.9,a.121.1.1 133291,133292 3bj6A 152 6.804 1jg8A 347 7.204 c.67.1.1 62946 1w7lA 422 7.608 c.67.1.1 109226 1rtwA 220 7.858 a.132.1.3 97823 1zybA 232 8.327 a.4.5.4,b.82.3.2 125815,125816 1xi9A 406 8.871 c.67.1.1 115355 3bjaA 139 9.808 2nyxA 168 10.36 2hr3A 147 10.76 a.4.5.28 136678 2gxgA 146 10.95 2id3A 225 11.03 a.4.1.9,a.121.1.1 137261,137262 1ynuA 473 11.42 c.67.1.4 123762 1d2fA 390 11.57 c.67.1.3 34411 2aaoA 166 12.23 2fbhA 146 12.50 a.4.5.28 133245 1j7lA 264 13.05 d.144.1.6 62697 2dgmA 466 13.32 c.67.1.6 131508 1lj9A 144 13.62 a.4.5.28 78035 1zzkA 82 13.64 d.51.1.1 125909 1gdeA 389 13.93 c.67.1.1 60456 1lk9A 448 13.95 c.67.1.1 78057 1m7yA 435 14.80 c.67.1.4 78761 1a0pA 290 15.66 a.60.9.1,d.163.1.1 18105,42165 2bbrA 195 15.81 1dfoA 417 15.94 c.67.1.4 34480 1lnwA 147 16.27 a.4.5.28 78104 2douA 376 16.59 1bl3A 160 16.70 c.55.3.2 33655 1vp4A 425 16.88 c.67.1.1 113935 2z20A 432 17.15 2hdyA 440 17.76 1w23A 360 17.95 c.67.1.4 114088 2qcxA 263 18.41 2ethA 154 18.65 a.4.5.28 132358 1ub0A 258 19.26 c.72.1.2 88394 3crjA 199 19.38 3d1uA 288 19.73 1s3jA 155 19.88 a.4.5.28 98437 2f2gA 221 20.39 a.132.1.3 132816 1l5aA 436 20.96 c.43.1.2,c.43.1.2 75923,75924 2qcoA 210 22.29 1xnfA 275 22.90 a.118.8.1 115580 2i7qA 402 23.53 2nnnA 140 23.54 2dtvA 397 23.92 2cdnA 201 24.56 c.37.1.1 130289 3c5iA 369 24.88 2dtjA 178 27.40 1in4A 334 28.04 a.4.5.11,c.37.1.20 62597,62598 1b8gA 429 28.52 c.67.1.4 34499 1tyhA 248 30.17 a.132.1.3 107458 2c8mA 262 30.32 3bddA 142 30.33 2o36A 674 31.10 2ho1A 252 31.44 1ki1B 352 31.65 a.87.1.1,b.55.1.1 72497,72498 1zejA 293 31.67 1d8dA 377 32.04 a.118.6.1 19185 1yizA 429 32.13 c.67.1.1 123375 3cedA 98 32.68 2q1zA 184 33.41 1f44A 324 33.57 a.60.9.1,d.163.1.1 64982,64983 3bwnA 391 34.15 2qrwA 128 34.63 2a61A 145 35.61 a.4.5.28 126187 1wstA 417 36.51 c.67.1.1 121244 1oohA 126 36.64 a.39.2.1 93383 2hufA 393 37.17 1bjnA 360 37.22 c.67.1.4 34469 2zg5A 397 37.47 2qfjA 216 38.25 2tysA 268 39.06 c.1.2.4 28572 2ct9A 208 39.35 1iugA 352 39.77 c.67.1.3 90699 2q83A 346 39.79 1m32A 366 40.05 c.67.1.3 78508 1nfpA 228 40.95 c.1.16.2 29555 2qg7A 458 41.31 1yadA 221 42.75 3btxA 204 43.57 2bv6A 142 43.67 1j7gA 144 43.69 c.110.1.1 84130 2pyqA 114 44.11 1htqA 477 44.15 d.15.9.1,d.128.1.1 71035,71036 2cxaA 256 44.25 d.108.1.6 130993 2hp0A 466 44.55 2ou3A 161 44.82 2grjA 192 45.16 2b5hA 200 45.75 b.82.1.19 127894 2dt9A 167 46.59 2fbiA 142 47.57 a.4.5.28 133246 1a0p 290 47.85 2r2nA 425 48.55 2g2bA 150 48.76 3csvA 333 48.99 1yakA 263 49.28 a.132.1.3 122833 2anrA 178 49.61 1sl8A 191 50.20 a.39.1.5 112099 2d1eA 248 50.98 1jf2A 195 51.17 a.39.1.5 62930 2c0rA 362 51.41 c.67.1.4 129604 2vooA 193 51.46 1e8aA 91 51.70 a.39.1.2 17188 1jf9A 408 51.70 c.67.1.3 62931 1na3A 91 52.17 k.38.1.1 85481 1s69A 124 52.28 a.1.1.1 105305 3bjhA 119 52.40 1txdA 385 52.70 a.87.1.1,b.55.1.1 107422,107423 2pftA 571 53.58 1lucB 324 55.04 c.1.16.1 29548 1fxlA 167 56.15 d.58.7.1,d.58.7.1 39183,39184 1p5tA 127 57.84 b.55.1.2 94148 1jyoA 130 58.06 d.198.1.1 67483 1u08A 386 58.16 c.67.1.1 107543 2fp1A 166 59.32 a.130.1.4 133891 1auiB 169 59.36 a.39.1.5 17325 3bhpA 60 59.82 2hpsA 186 60.19 1eyvA 156 60.44 a.79.1.1 18446 1bj4A 470 60.75 c.67.1.4 34479 1t3iA 420 60.98 c.67.1.3 106354 3bosA 242 62.22 1j98A 157 63.49 d.185.1.2 62755 1ofgA 381 63.77 c.2.1.3,d.81.1.5 30064,39979 1pmmA 466 64.27 c.67.1.6 94901 1eg5A 384 65.50 c.67.1.3 34429 1z3xA 238 66.42 a.118.1.22,a.261.1.1 124416,124417 2cohA 202 66.44 a.4.5.4,b.82.3.2 130677,130678 1a4pA 96 66.63 a.39.1.2 17176 3bczA 293 67.77 2gnxA 365 68.10 1itg 166 68.12 1elwA 118 68.57 a.118.8.1 19207 1i6xA 209 68.95 a.4.5.4,b.82.3.2 83673,83674 2v7fA 150 69.12 2dr1A 386 69.90 1fe0A 68 70.50 d.58.17.1 39345 3bs9A 87 71.10 1zin 217 71.59 1xd7A 145 71.99 a.4.5.55 109566 1nvpB 57 72.43 a.32.1.1 92211 1z67A 135 74.51 a.259.1.1 124507 1jgsA 138 75.25 a.4.5.28 66683 2di4A 238 77.60 a.269.1.1 131522 2ondA 308 77.80 1qvtA 194 77.82 a.4.1.9,a.121.1.1 104602,104603 2q91A 101 78.92 1xfrA 128 79.36 1omrA 201 80.13 a.39.1.5 93349 1y791 680 80.80 1fsiA 189 82.41 d.61.1.1 39536 3bqpA 80 83.59 1juvA 193 83.79 c.71.1.1 90912 3cdlA 203 83.91 2bvcA 486 84.63 d.15.9.1,d.128.1.1 129243,129244 2q4xA 221 85.41 a.132.1.3 139880 1vjeA 166 85.99 d.185.1.2 100807 2h61A 92 87.18 a.39.1.2 136169 2gpuA 230 87.27 a.123.1.1 135493 3ceaA 346 87.51 2rgiA 98 87.54 1js3A 486 87.58 c.67.1.6 67215 1qo0D 196 88.76 c.23.1.3 31125 2e5aA 347 89.24 1ew6A 137 89.86 a.1.1.2 15637