# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 1.05e-60 d.185.1.1,d.185.1.1 61166,61167 1ppjA 446 1.56e-59 d.185.1.1,d.185.1.1 104252,104253 1ppjB 439 1.78e-58 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 2.68e-57 1kb9A 431 2.92e-56 d.185.1.1,d.185.1.1 77311,77312 2g47A 990 1.07e-55 1ezvA 430 2.33e-55 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 2.51e-54 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2fgeA 995 6.45e-51 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1kb9B 352 1.69e-43 d.185.1.1,d.185.1.1 77313,77314 1ezvB 352 9.96e-43 d.185.1.1,d.185.1.1 59543,59544 3cx5B 352 1.44e-41 1wyuB 474 0.9045 c.67.1.7 121453 1i1iP 681 1.316 d.92.1.5 40297 3buvA 326 2.189 3bpvA 138 2.204 3broA 141 2.668 1m6sA 347 2.670 c.67.1.1 78701 1c7nA 399 3.143 c.67.1.3 34413 1wovA 250 3.886 a.132.1.1 121124 1rtwA 220 4.350 a.132.1.3 97823 1kl1A 419 4.580 c.67.1.4 72663 1zybA 232 4.664 a.4.5.4,b.82.3.2 125815,125816 2fa5A 162 5.214 3boqA 160 5.892 2p4fA 299 5.938 2hoxA 427 6.636 c.67.1.1 136644 1bw0A 416 6.741 c.67.1.1 34385 3bj6A 152 6.745 2rdpA 150 6.881 1jg8A 347 7.120 c.67.1.1 62946 1aisB 200 7.535 a.74.1.2,a.74.1.2 18384,18385 2fd5A 180 7.862 a.4.1.9,a.121.1.1 133291,133292 2id3A 225 9.776 a.4.1.9,a.121.1.1 137261,137262 2aaoA 166 10.77 2dgmA 466 11.32 c.67.1.6 131508 1w7lA 422 11.54 c.67.1.1 109226 2nyxA 168 11.66 1j7lA 264 11.79 d.144.1.6 62697 2gxgA 146 11.85 3bjaA 139 12.40 2hr3A 147 12.42 a.4.5.28 136678 2qcxA 263 12.51 1xi9A 406 12.92 c.67.1.1 115355 1dfoA 417 12.99 c.67.1.4 34480 1d2fA 390 14.03 c.67.1.3 34411 2hdyA 440 14.07 2f2gA 221 14.24 a.132.1.3 132816 1zzkA 82 14.33 d.51.1.1 125909 2o36A 674 14.69 1a0pA 290 14.73 a.60.9.1,d.163.1.1 18105,42165 1w23A 360 16.38 c.67.1.4 114088 2fbhA 146 16.65 a.4.5.28 133245 3d1uA 288 16.75 1in4A 334 16.98 a.4.5.11,c.37.1.20 62597,62598 1lnwA 147 17.43 a.4.5.28 78104 1lk9A 448 18.17 c.67.1.1 78057 1lj9A 144 18.26 a.4.5.28 78035 1bl3A 160 18.43 c.55.3.2 33655 1m7yA 435 19.02 c.67.1.4 78761 1ub0A 258 19.42 c.72.1.2 88394 1gdeA 389 19.92 c.67.1.1 60456 2z20A 432 19.95 2ethA 154 20.13 a.4.5.28 132358 2bbrA 195 20.27 1ynuA 473 21.20 c.67.1.4 123762 2qcoA 210 21.26 1xnfA 275 22.10 a.118.8.1 115580 1tyhA 248 22.27 a.132.1.3 107458 2cdnA 201 22.46 c.37.1.1 130289 2i7qA 402 23.00 2douA 376 23.04 1s3jA 155 24.48 a.4.5.28 98437 2q83A 346 26.20 3c5iA 369 26.53 1wstA 417 26.76 c.67.1.1 121244 1l5aA 436 27.03 c.43.1.2,c.43.1.2 75923,75924 1vp4A 425 27.15 c.67.1.1 113935 1f44A 324 27.28 a.60.9.1,d.163.1.1 64982,64983 2dtvA 397 27.36 2c8mA 262 27.38 1qvtA 194 27.80 a.4.1.9,a.121.1.1 104602,104603 2qfjA 216 28.31 1zejA 293 30.56 3csvA 333 30.75 2nnnA 140 30.89 1nfpA 228 31.00 c.1.16.2 29555 3bddA 142 31.98 2cohA 202 32.80 a.4.5.4,b.82.3.2 130677,130678 3bwnA 391 33.81 1yakA 263 34.39 a.132.1.3 122833 1oohA 126 34.70 a.39.2.1 93383 1yizA 429 35.08 c.67.1.1 123375 2q1zA 184 35.13 2tysA 268 35.94 c.1.2.4 28572 3crjA 199 36.13 3btxA 204 36.98 1yadA 221 37.33 2grjA 192 37.34 2anrA 178 38.37 1b8gA 429 38.99 c.67.1.4 34499 2b5hA 200 39.57 b.82.1.19 127894 1bjnA 360 40.16 c.67.1.4 34469 1d8dA 377 40.39 a.118.6.1 19185 2g2bA 150 40.60 2fp1A 166 40.86 a.130.1.4 133891 1bj4A 470 41.04 c.67.1.4 34479 2ct9A 208 41.08 2dtjA 178 41.29 1i6xA 209 41.50 a.4.5.4,b.82.3.2 83673,83674 1ki1B 352 42.48 a.87.1.1,b.55.1.1 72497,72498 2qg7A 458 44.44 1iugA 352 44.98 c.67.1.3 90699 3cedA 98 45.62 1n45A 233 45.65 a.132.1.1 79981 1eyvA 156 46.37 a.79.1.1 18446 2vooA 193 46.43 1a0p 290 46.64 2ho1A 252 47.01 1ofgA 381 48.18 c.2.1.3,d.81.1.5 30064,39979 2di4A 238 48.37 a.269.1.1 131522 2dt9A 167 48.78 1m32A 366 48.93 c.67.1.3 78508 1sl8A 191 49.75 a.39.1.5 112099 2q4xA 221 50.58 a.132.1.3 139880 2zg5A 397 50.79 2pftA 571 51.90 2hufA 393 52.03 2gnxA 365 52.53 2cxaA 256 52.61 d.108.1.6 130993 2c0rA 362 52.76 c.67.1.4 129604 2a61A 145 53.12 a.4.5.28 126187 1e8aA 91 53.15 a.39.1.2 17188 1htqA 477 53.71 d.15.9.1,d.128.1.1 71035,71036 1juvA 193 53.80 c.71.1.1 90912 2fbiA 142 55.97 a.4.5.28 133246 3bqpA 80 56.65 2qrwA 128 56.83 2d1eA 248 57.15 1jf2A 195 57.30 a.39.1.5 62930 2v7fA 150 57.45 1na3A 91 58.93 k.38.1.1 85481 1auiB 169 59.15 a.39.1.5 17325 1rec 201 59.27 1yjsA 419 59.46 c.67.1.4 123461 1lucB 324 60.22 c.1.16.1 29548 1jf9A 408 60.67 c.67.1.3 62931 3bhpA 60 60.74 3bosA 242 61.15 2ou3A 161 61.25 1p5tA 127 61.26 b.55.1.2 94148 1j7gA 144 62.13 c.110.1.1 84130 1jyoA 130 62.28 d.198.1.1 67483 1s69A 124 62.30 a.1.1.1 105305 1pmmA 466 62.86 c.67.1.6 94901 1elwA 118 63.38 a.118.8.1 19207 1omrA 201 64.26 a.39.1.5 93349 2ondA 308 64.48 1fxlA 167 65.98 d.58.7.1,d.58.7.1 39183,39184 1fe0A 68 66.08 d.58.17.1 39345 1qgrA 876 66.31 a.118.1.1 19119 1z67A 135 66.46 a.259.1.1 124507 3bjhA 119 66.46 1ug3A 339 66.81 a.118.1.14,a.118.1.14 119671,119672 2pyqA 114 67.61 1fsiA 189 68.18 d.61.1.1 39536 1t3iA 420 68.21 c.67.1.3 106354 1a4pA 96 68.44 a.39.1.2 17176 2hpsA 186 70.33 1z3xA 238 71.39 a.118.1.22,a.261.1.1 124416,124417 3bczA 293 71.69 1f5qB 252 71.86 a.74.1.1,a.74.1.1 18362,18363 3bs9A 87 73.72 1zin 217 73.78 1u08A 386 73.89 c.67.1.1 107543 2dobA 83 74.97 1y791 680 76.37 2c40A 312 77.33 2hp0A 466 77.83 1txdA 385 78.10 a.87.1.1,b.55.1.1 107422,107423 3cdlA 203 82.46 1nvpB 57 82.59 a.32.1.1 92211 1ihgA 370 82.85 a.118.8.1,b.62.1.1 62380,62381 1xjzA 233 83.20 a.132.1.1 122049 1ew6A 137 83.29 a.1.1.2 15637 1jgsA 138 83.87 a.4.5.28 66683 1wzdA 215 84.03 a.132.1.1 121493 2qr4A 587 84.47 1ci9A 392 84.75 e.3.1.1 64767 2q91A 101 85.07 1itg 166 85.30 2ho3A 325 85.69 2e5aA 347 86.20 2phpA 192 86.64 1rv3A 483 87.48 c.67.1.4 105101 2h61A 92 88.07 a.39.1.2 136169 1huw 166 88.25 1qo0D 196 89.24 c.23.1.3 31125 2bv6A 142 89.41 1z72A 225 89.55 a.132.1.3 124583